Alternatives and similar repositories for oxdna-viewer

Users that are interested in oxdna-viewer are comparing it to the libraries listed below

• lorenzo-rovigatti / oxDNA
  A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
  ☆64Updated last week
• lorenzo-rovigatti / tacoxDNA
  A collection of tools for DNA modelling
  ☆22Updated 5 months ago
• drorlab / pensa
  PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
  ☆148Updated 11 months ago
• avirshup / py3dmol
  ☆135Updated 9 years ago
• Acellera / moleculekit
  MoleculeKit: Your favorite molecule manipulation kit
  ☆232Updated last month
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆122Updated last year
• osmart / hole2
  Source code for HOLE program.
  ☆37Updated last year
• MobleyLab / drug-computing
  Educational materials for, and related to, UC Irvine's Drug Discovery Computing Techniques course (PharmSci 175/275), currently taught by…
  ☆164Updated 10 months ago
• jgreener64 / mmterm
  View proteins and trajectories in the terminal
  ☆113Updated 5 years ago
• OpenBioSim / biosimspace
  An interoperable Python framework for biomolecular simulation.
  ☆143Updated last week
• GrossfieldLab / loos
  LOOS: a lightweight object-oriented structure analysis library
  ☆127Updated 3 months ago
• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆20Updated 3 years ago
• KULL-Centre / CALVADOS
  ☆80Updated 2 weeks ago
• choderalab / yank
  An open, extensible Python framework for GPU-accelerated alchemical free energy calculations.
  ☆193Updated 2 years ago
• jalemkul / gmx_tutorials_livecoms
  LiveCoMS GROMACS Tutorials Paper
  ☆136Updated 6 years ago
• rlabduke / reduce
  Reduce - tool for adding and correcting hydrogens in PDB files
  ☆163Updated 3 weeks ago
• whitead / molbloom
  Molecular bloom filter tool
  ☆128Updated 5 months ago
• rcsb / py-mmcif
  mmCIF Core Access Library
  ☆50Updated this week
• Tsjerk / Insane
  INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems
  ☆75Updated last year
• samuelmurail / gromacs_py
  Gromacs_py is a python library allowing a simplified use of the gromacs MD simulation software. Gromacs_py can build topologie based on a…
  ☆51Updated 3 years ago
• openforcefield / protein-ligand-benchmark
  Protein-Ligand Benchmark Dataset for Free Energy Calculations
  ☆214Updated last year
• Gallicchio-Lab / AToM-OpenMM
  OpenMM-based framework for absolute and relative binding free energy calculations with the Alchemical Transfer Method
  ☆151Updated last week
• Amber-MD / pytraj
  Python interface of cpptraj
  ☆185Updated last week
• choderalab / openmmtools
  A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.
  ☆312Updated 3 weeks ago
• openmm / openmm-setup
  An application for configuring and running simulations with OpenMM
  ☆76Updated 3 months ago
• QVina / qvina
  Accurately speed up AutoDock Vina
  ☆158Updated 2 years ago
• whitead / molcloud
  Make a bunch of molecules
  ☆97Updated last year
• TinkerTools / tinker
  Tinker: Software Tools for Molecular Design
  ☆160Updated last week
• mittinatten / freesasa
  C-library for calculating Solvent Accessible Surface Areas
  ☆174Updated 2 months ago
• Amber-MD / cpptraj
  Biomolecular simulation trajectory/data analysis.
  ☆162Updated 2 months ago