sulcgroup / oxdna-viewerLinks
oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis
☆52Updated 2 weeks ago
Alternatives and similar repositories for oxdna-viewer
Users that are interested in oxdna-viewer are comparing it to the libraries listed below
Sorting:
- A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings☆61Updated last month
- ☆128Updated 9 years ago
- An open, extensible Python framework for GPU-accelerated alchemical free energy calculations.☆187Updated 2 years ago
- Educational materials for, and related to, UC Irvine's Drug Discovery Computing Techniques course (PharmSci 175/275), currently taught by…☆158Updated 7 months ago
- Software for biomolecular electrostatics and solvation calculations☆111Updated last year
- MoleculeKit: Your favorite molecule manipulation kit☆227Updated last month
- LiveCoMS GROMACS Tutorials Paper☆126Updated 6 years ago
- An interoperable Python framework for biomolecular simulation.☆127Updated this week
- C-library for calculating Solvent Accessible Surface Areas☆160Updated 3 months ago
- LOOS: a lightweight object-oriented structure analysis library☆125Updated this week
- CHARMM and AMBER forcefields for OpenMM (with small molecule support)☆325Updated this week
- Tinker: Software Tools for Molecular Design☆148Updated last week
- PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.☆144Updated 8 months ago
- View proteins and trajectories in the terminal☆110Updated 5 years ago
- A collection of tools for DNA modelling☆22Updated 2 months ago
- PROPKA predicts the pKa values of ionizable groups in proteins and protein-ligand complexes based in the 3D structure.☆318Updated last year
- Force fields produced by the Open Force Field Initiative☆161Updated this week
- A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA☆20Updated 3 years ago
- HTMD: Programming Environment for Molecular Discovery☆268Updated 3 months ago
- Make a bunch of molecules☆96Updated 10 months ago
- Python interface of cpptraj☆183Updated 8 months ago
- A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.☆295Updated last week
- OFFICIAL: AnteChamber PYthon Parser interfacE☆236Updated 4 months ago
- ☆72Updated this week
- Experiments with expanded ensembles to explore chemical space☆193Updated 8 months ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆159Updated 2 months ago
- The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation avai…☆362Updated this week
- Describe and apply transformation on molecular structures and topologies☆121Updated last week
- Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting f…☆271Updated last year
- Let LLM run your MDs.☆228Updated 3 weeks ago