oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis
☆56May 6, 2026Updated last month
Alternatives and similar repositories for oxdna-viewer
Users that are interested in oxdna-viewer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The standalone code to simulate the oxDNA/oxRNA models, now equipped with Python bindings and the oxDNA_analysis_tools suite☆68Jun 1, 2026Updated last week
- DNA origami design tool☆39Jan 18, 2024Updated 2 years ago
- Cadnano2☆61Feb 12, 2025Updated last year
- Designer scaffolded DNA DX-based wireframe lattices☆14Jul 28, 2018Updated 7 years ago
- A GUI for automated sequence design of wireframe scaffolded DNA origami☆14Nov 3, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SNUPI (Structured NUcleic-acids Programming Interface)☆15Feb 19, 2025Updated last year
- Python scripting library for generating designs readable by scadnano.☆17Apr 3, 2026Updated 2 months ago
- Python tool for auto-breaking DNA origami staples☆16Jan 4, 2026Updated 5 months ago
- Web application for designing DNA structures such as DNA origami.☆34May 28, 2026Updated last week
- ENSnano, a 3D graphical application for DNA nanostructures.☆53Dec 15, 2023Updated 2 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆14Dec 7, 2021Updated 4 years ago
- Computational analysis of nucleic acids structures using graph neural networks☆15Mar 25, 2024Updated 2 years ago
- Nucleic acid sequence designer☆12Apr 28, 2026Updated last month
- A Python library for constructing polymer topologies and coordinates☆22Sep 23, 2025Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tools for coarse-grained molecular dynamics simulations using the SPICA force field☆13May 12, 2026Updated 3 weeks ago
- A container for the forna visualization software.☆22May 30, 2024Updated 2 years ago
- Collection of interaction and molecule parameters for the Martini3 force-field☆21Feb 7, 2023Updated 3 years ago
- A modern python package for semi-automated gel electrophoresis analysis (Agarose, PAGE, ...)☆13Sep 27, 2024Updated last year
- A voxel based approach for dynamic cluster analysis of molecular dynamics trajectories.☆32Nov 5, 2025Updated 7 months ago
- PyQt5 version of cadnano☆73Nov 15, 2023Updated 2 years ago
- Density based object completion over PBC.☆31Apr 23, 2026Updated last month
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated last year
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆22Mar 13, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Open source single image super-resolution toolbox containing various functionality for training a diverse number of state-of-the-art sup…☆18Jul 4, 2023Updated 2 years ago
- Prepare topology and coordinate file for CG models in Genesis.☆13May 14, 2026Updated 3 weeks ago
- segmentation of spherical vesicles in cryo-electron tomography☆12Oct 25, 2024Updated last year
- Python utility functions for the analysis of diffusion in molecular dynamics simulation trajectories.☆18Jun 21, 2022Updated 3 years ago
- PyQt4 version of cadnano with Maya integration☆15Jun 21, 2018Updated 7 years ago
- An Autodesk Maya plugin for modelling DNA based structures☆18Jun 11, 2014Updated 11 years ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆32Jan 17, 2023Updated 3 years ago
- TSCoDe is a systematical conformational embedder for small molecules. It helps computational chemists build transition states and binding…☆14Jan 6, 2025Updated last year
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Collection of regression tests for LAMMPS MD code☆12Sep 9, 2025Updated 8 months ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 6 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- ☆19Feb 3, 2025Updated last year
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- Generate nice icons of molecules with a python script☆93Dec 30, 2025Updated 5 months ago
- Python image tiling library for image processing, object detection, etc.☆12Jul 25, 2024Updated last year