Alternatives and similar repositories for oxdna-viewer:

Users that are interested in oxdna-viewer are comparing it to the libraries listed below

• lorenzo-rovigatti / oxDNA
  A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
  ☆46Updated this week
• lorenzo-rovigatti / tacoxDNA
  A collection of tools for DNA modelling
  ☆18Updated 9 months ago
• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆19Updated 2 years ago
• lcbb / athena
  A GUI for automated sequence design of wireframe scaffolded DNA origami
  ☆14Updated 3 years ago
• deGrootLab / pmx
  Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
  ☆141Updated 3 months ago
• marrink-lab / vermouth-martinize
  Describe and apply transformation on molecular structures and topologies
  ☆107Updated this week
• Electrostatics / pdb2pqr
  PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
  ☆137Updated last week
• jalemkul / gmx_tutorials_livecoms
  LiveCoMS GROMACS Tutorials Paper
  ☆112Updated 5 years ago
• OpenBioSim / biosimspace
  An interoperable Python framework for biomolecular simulation.
  ☆106Updated 2 weeks ago
• maccallumlab / martini_openmm
  ☆52Updated last year
• SSDL-SNU / SNUPI
  SNUPI (Structured NUcleic-acids Programming Interface)
  ☆12Updated 2 weeks ago
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆108Updated last year
• MooersLab / pymolshortcuts
  The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…
  ☆75Updated 10 months ago
• whitead / molcloud
  Make a bunch of molecules
  ☆95Updated 3 months ago
• KULL-Centre / CALVADOS
  ☆46Updated 2 months ago
• GrossfieldLab / loos
  LOOS: a lightweight object-oriented structure analysis library
  ☆124Updated 3 weeks ago
• avirshup / py3dmol
  ☆109Updated 8 years ago
• marrink-lab / martini-forcefields
  Collection of interaction and molecule parameters for the Martini3 force-field
  ☆12Updated 2 years ago
• openmm / openmm-setup
  An application for configuring and running simulations with OpenMM
  ☆62Updated 4 months ago
• mittinatten / freesasa
  C-library for calculating Solvent Accessible Surface Areas
  ☆126Updated 9 months ago
• choderalab / yank
  An open, extensible Python framework for GPU-accelerated alchemical free energy calculations.
  ☆183Updated last year
• michellab / BioSimSpace
  Code and resources for the EPSRC BioSimSpace project.
  ☆79Updated 4 months ago
• wlsong / PyLipID
  A python toolkit for analysing membrane protein-lipid interactions.
  ☆63Updated last year
• Tsjerk / Insane
  INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems
  ☆54Updated 11 months ago
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆98Updated 6 months ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆86Updated 6 months ago
• MobleyLab / drug-computing
  Educational materials for, and related to, UC Irvine's Drug Discovery Computing Techniques course (PharmSci 175/275), currently taught by…
  ☆151Updated 2 weeks ago
• RashmiKumari / g_mmpbsa
  MM-PBSA method for GROMACS. For full description, please visit homepage:
  ☆67Updated this week
• matteoferla / Fragmenstein
  Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse
  ☆184Updated last month
• skblnw / mkvmd_render
  How to make images for publication using VMD
  ☆30Updated 3 years ago