Alternatives and similar repositories for oxdna-viewer

Users that are interested in oxdna-viewer are comparing it to the libraries listed below

• lorenzo-rovigatti / oxDNA
  A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
  ☆62Updated last week
• avirshup / py3dmol
  ☆130Updated 9 years ago
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆118Updated last year
• lorenzo-rovigatti / tacoxDNA
  A collection of tools for DNA modelling
  ☆22Updated 4 months ago
• whitead / molcloud
  Make a bunch of molecules
  ☆97Updated last year
• OpenBioSim / biosimspace
  An interoperable Python framework for biomolecular simulation.
  ☆138Updated last week
• jalemkul / gmx_tutorials_livecoms
  LiveCoMS GROMACS Tutorials Paper
  ☆133Updated 6 years ago
• Tsjerk / Insane
  INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems
  ☆71Updated last year
• Acellera / moleculekit
  MoleculeKit: Your favorite molecule manipulation kit
  ☆228Updated last week
• jgreener64 / mmterm
  View proteins and trajectories in the terminal
  ☆112Updated 5 years ago
• lcbb / athena
  A GUI for automated sequence design of wireframe scaffolded DNA origami
  ☆14Updated 4 years ago
• marrink-lab / vermouth-martinize
  Describe and apply transformation on molecular structures and topologies
  ☆127Updated last week
• KULL-Centre / CALVADOS
  ☆78Updated last month
• GrossfieldLab / loos
  LOOS: a lightweight object-oriented structure analysis library
  ☆125Updated last month
• osmart / hole2
  Source code for HOLE program.
  ☆37Updated last year
• drorlab / pensa
  PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
  ☆145Updated 10 months ago
• rlabduke / reduce
  Reduce - tool for adding and correcting hydrogens in PDB files
  ☆159Updated 6 months ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆112Updated last year
• openmm / openmm-setup
  An application for configuring and running simulations with OpenMM
  ☆75Updated last month
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆133Updated 2 years ago
• mittinatten / freesasa
  C-library for calculating Solvent Accessible Surface Areas
  ☆168Updated 3 weeks ago
• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆20Updated 3 years ago
• KULL-Centre / papers
  Material from papers from KULL centre
  ☆71Updated last year
• choderalab / yank
  An open, extensible Python framework for GPU-accelerated alchemical free energy calculations.
  ☆192Updated 2 years ago
• MooersLab / pymolshortcuts
  The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…
  ☆84Updated 2 months ago
• VTX-Molecular-Visualization / VTX
  ☆64Updated last week
• michellab / BioSimSpace
  Code and resources for the EPSRC BioSimSpace project.
  ☆78Updated 3 months ago
• MobleyLab / drug-computing
  Educational materials for, and related to, UC Irvine's Drug Discovery Computing Techniques course (PharmSci 175/275), currently taught by…
  ☆161Updated 9 months ago
• intbio / gromacs_ff
  Trusted force field files for gromacs
  ☆64Updated last year
• openforcefield / openff-forcefields
  Force fields produced by the Open Force Field Initiative
  ☆172Updated 3 weeks ago