lorenzo-rovigatti / tacoxDNA

Related projects: ⓘ

• lorenzo-rovigatti / oxDNA
  A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
  ☆42Updated this week
• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆20Updated 2 years ago
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆91Updated 2 weeks ago
• ccsb-scripps / ADCP
  AutoDock CrankPep for peptide and disordered protein docking
  ☆39Updated 3 years ago
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆56Updated 3 months ago
• cabb99 / open3spn2
  An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
  ☆18Updated 4 months ago
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆89Updated last year
• wlsong / PyLipID
  A python toolkit for analysing membrane protein-lipid interactions.
  ☆58Updated last year
• RashmiKumari / g_mmpbsa
  MM-PBSA method for GROMACS. For full description, please visit homepage:
  ☆64Updated 4 months ago
• MooersLab / pymolshortcuts
  The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…
  ☆67Updated 4 months ago
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 2 years ago
• BrooksResearchGroup-UM / pyCHARMM-Workshop
  pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…
  ☆61Updated last year
• maccallumlab / martini_openmm
  ☆47Updated last year
• marrink-lab / martini-forcefields
  Collection of interaction and molecule parameters for the Martini3 force-field
  ☆11Updated last year
• KULL-Centre / papers
  Material from papers from KULL centre
  ☆64Updated 3 months ago
• JoaoRodrigues / pdb-tools
  Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.
  ☆24Updated 2 years ago
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆32Updated last month
• pstansfeld / MemProtMD
  ☆31Updated last month
• abeebyekeen / CHAPERONg
  CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
  ☆32Updated 3 weeks ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆34Updated 6 months ago
• sulcgroup / oxdna-viewer
  oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis
  ☆48Updated this week
• paiardin / DockingPie
  A Consensus Docking Plugin for PyMOL
  ☆63Updated 3 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago
• fmaschietto / mdigest
  ☆28Updated 3 months ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆78Updated 3 years ago
• isambard-uob / isambard
  Intelligent System for Analysis, Model Building And Rational Design of biomolecules.
  ☆20Updated 3 years ago
• MiaoLab20 / gamd-openmm
  Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…
  ☆66Updated 3 months ago
• ChemBioHTP / EnzyHTP
  EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling
  ☆10Updated last week
• MDplot / MDplot
  MDplot: Visualise Molecular Dynamics
  ☆26Updated 2 years ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆28Updated 11 months ago