A collection of tools for DNA modelling
☆23Aug 9, 2025Updated 8 months ago
Alternatives and similar repositories for tacoxDNA
Users that are interested in tacoxDNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The standalone code to simulate the oxDNA/oxRNA models, now equipped with Python bindings☆64Updated this week
- oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis☆54Mar 25, 2026Updated 2 weeks ago
- A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA☆20Jul 7, 2022Updated 3 years ago
- A GUI for automated sequence design of wireframe scaffolded DNA origami☆14Nov 3, 2021Updated 4 years ago
- Designer scaffolded DNA DX-based wireframe lattices☆14Jul 28, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Python scripting library for generating designs readable by scadnano.☆16Updated this week
- Cadnano2☆60Feb 12, 2025Updated last year
- DNA origami design tool☆39Jan 18, 2024Updated 2 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆13Dec 7, 2021Updated 4 years ago
- ENSnano, a 3D graphical application for DNA nanostructures.☆52Dec 15, 2023Updated 2 years ago
- Web application for designing DNA structures such as DNA origami.☆33Apr 1, 2026Updated last week
- Tools for coarse-grained molecular dynamics simulations using the SPICA force field☆13Apr 11, 2025Updated 11 months ago
- SNUPI (Structured NUcleic-acids Programming Interface)☆15Feb 19, 2025Updated last year
- Coarse-grained molecular model of DNA (LAMMPS plugin)☆17Apr 12, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python tool for auto-breaking DNA origami staples☆16Jan 4, 2026Updated 3 months ago
- 🧬 Analyzing compression algorithms for genomic sequencing data☆12Feb 14, 2020Updated 6 years ago
- Collection of interaction and molecule parameters for the Martini3 force-field☆21Feb 7, 2023Updated 3 years ago
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆18Jan 12, 2026Updated 2 months ago
- Python package to construct free energy profiles from biased molecular simulation data using both log-likelihood maximization and self-co…☆21Jun 27, 2024Updated last year
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.☆28Apr 15, 2025Updated 11 months ago
- Tree Search Molecular Dynamics Simulation☆11Aug 25, 2019Updated 6 years ago
- segmentation of spherical vesicles in cryo-electron tomography☆12Oct 25, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- PyQt4 version of cadnano with Maya integration☆15Jun 21, 2018Updated 7 years ago
- ☆64Dec 10, 2025Updated 3 months ago
- Subset of AmberTools, with updates and modifications☆16Updated this week
- Rigid Body Dynamics with OpenMM☆12May 29, 2018Updated 7 years ago
- Unified Free Energy Dynamics (UFED) simulations with OpenMM☆35Aug 20, 2025Updated 7 months ago
- A Prot paper related materials☆11Sep 5, 2022Updated 3 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- ☆19Feb 3, 2025Updated last year
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Jun 19, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods☆13Dec 13, 2023Updated 2 years ago
- Demo plugin for PyMOL with PyQt☆12Jun 14, 2019Updated 6 years ago
- OS native dialogs for Windows, MacOS, and Linux☆33Feb 4, 2022Updated 4 years ago
- ☆10Sep 29, 2022Updated 3 years ago
- pains filter using rdktit☆10Mar 17, 2015Updated 11 years ago
- PyQt5 version of cadnano☆73Nov 15, 2023Updated 2 years ago
- CRISPR Indel, base edit analysis☆11Aug 1, 2020Updated 5 years ago