Alternatives and similar repositories for tacoxDNA

Users that are interested in tacoxDNA are comparing it to the libraries listed below

• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆20Updated 3 years ago
• KULL-Centre / _2024_Cao_CALVADOSCOM
  ☆19Updated 8 months ago
• KULL-Centre / CALVADOS
  ☆78Updated last month
• KULL-Centre / papers
  Material from papers from KULL centre
  ☆71Updated last year
• pstansfeld / MemProtMD
  ☆45Updated 3 weeks ago
• Lemkul-Lab / gmx_tutorials_jpcb
  Input files for GROMACS tutorials written for the Journal of Physical Chemistry B
  ☆23Updated last year
• ChemBioHTP / EnzyHTP
  EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling
  ☆29Updated 3 weeks ago
• intbio / gromacs_ff
  Trusted force field files for gromacs
  ☆64Updated last year
• tiwarylab / alphafold2rave
  ☆69Updated last year
• RUBi-ZA / MD-TASK
  Tool suite for analysing molecular dynamics trajectories using network analysis and PRS
  ☆52Updated 6 months ago
• VTX-Molecular-Visualization / VTX
  ☆64Updated last week
• fmaschietto / mdigest
  ☆34Updated last year
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆38Updated 4 months ago
• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆47Updated last year
• BrooksResearchGroup-UM / pyCHARMM-Workshop
  pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…
  ☆72Updated 2 months ago
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆118Updated last year
• samuelmurail / gromacs_py
  Gromacs_py is a python library allowing a simplified use of the gromacs MD simulation software. Gromacs_py can build topologie based on a…
  ☆49Updated 3 years ago
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆37Updated 6 months ago
• paiardin / DockingPie
  A Consensus Docking Plugin for PyMOL
  ☆79Updated last year
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆76Updated 8 months ago
• maccallumlab / martini_openmm
  ☆58Updated this week
• maxscheurer / pycontact
  Analysis of non-covalent interactions in MD trajectories
  ☆65Updated 11 months ago
• MiaoLab20 / gamd-openmm
  Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…
  ☆89Updated 4 months ago
• cabb99 / open3spn2
  An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
  ☆19Updated 7 months ago
• tdudgeon / simple-simulate-complex
  Simple protein-ligand complex simulation with OpenMM
  ☆91Updated 2 years ago
• Tsjerk / Insane
  INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems
  ☆72Updated last year
• abeebyekeen / CHAPERONg
  CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
  ☆57Updated 4 months ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆90Updated 5 years ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆112Updated last year
• MiaoLab20 / pyreweighting
  ☆32Updated 2 years ago