Alternatives and similar repositories for athena

Users that are interested in athena are comparing it to the libraries listed below

• SSDL-SNU / SNUPI
  SNUPI (Structured NUcleic-acids Programming Interface)
  ☆12Updated 3 months ago
• sulcgroup / oxdna-viewer
  oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis
  ☆53Updated last month
• lorenzo-rovigatti / tacoxDNA
  A collection of tools for DNA modelling
  ☆20Updated last year
• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆20Updated 2 years ago
• lorenzo-rovigatti / oxDNA
  A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
  ☆54Updated 2 weeks ago
• KULL-Centre / CALVADOS
  ☆64Updated this week
• yakomaxa / PyMOL-Wasm
  PyMOL-wasm port's binary and html/javascript code
  ☆24Updated last year
• ChemBioHTP / EnzyHTP
  EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling
  ☆25Updated this week
• KULL-Centre / _2023_Tesei_IDRome
  ☆42Updated last month
• PDBeurope / ccdutils
  A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…
  ☆57Updated 3 months ago
• pstansfeld / MemProtMD
  ☆40Updated 3 weeks ago
• skblnw / mkvmd_render
  How to make images for publication using VMD
  ☆33Updated 4 years ago
• UC-Davis-molecular-computing / scadnano-python-package
  Python scripting library for generating designs readable by scadnano.
  ☆16Updated 3 weeks ago
• lcbb / pyDAEDALUS
  This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami
  ☆17Updated last year
• abeebyekeen / CHAPERONg
  CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
  ☆46Updated 5 months ago
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆68Updated 2 months ago
• mirabdi / PDAnalysis
  ☆32Updated last year
• drorlab / pensa
  PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
  ☆139Updated 3 months ago
• tiwarylab / alphafold2rave
  ☆68Updated 11 months ago
• openmm / openmm-cookbook
  The OpenMM Cookbook and Tutorials
  ☆43Updated last year
• maccallumlab / martini_openmm
  ☆54Updated 2 years ago
• ELELAB / LipidDyn
  repository associated to our pipeline for lipid dynamics
  ☆11Updated 11 months ago
• jgreener64 / mmterm
  View proteins and trajectories in the terminal
  ☆108Updated 4 years ago
• openmm / openmm-setup
  An application for configuring and running simulations with OpenMM
  ☆69Updated 6 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆66Updated 9 months ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆95Updated 9 months ago
• rcsb / py-rcsb-api
  Python interface for RCSB.org API services
  ☆29Updated last week
• VTX-Molecular-Visualization / VTX
  ☆41Updated this week
• Valdes-Tresanco-MS / AMDock
  (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
  ☆69Updated last year
• log-md / logmd
  ☆58Updated last month