lcbb / athena
A GUI for automated sequence design of wireframe scaffolded DNA origami
☆12Updated 2 years ago
Related projects: ⓘ
- SNUPI (Structured NUcleic-acids Programming Interface)☆11Updated last month
- oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis☆48Updated this week
- This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami☆16Updated 6 months ago
- A collection of tools for DNA modelling☆17Updated 4 months ago
- A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings☆42Updated this week
- A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA☆20Updated 2 years ago
- Python scripting library for generating designs readable by scadnano.☆13Updated 2 months ago
- ☆29Updated last week
- Software for biomolecular electrostatics and solvation calculations☆91Updated 2 weeks ago
- MM-PBSA method for GROMACS. For full description, please visit homepage:☆64Updated 4 months ago
- Predict disorder and disorder binding from AlphaFold structures☆14Updated last year
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆67Updated 4 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆91Updated last year
- Collection of interaction and molecule parameters for the Martini3 force-field☆11Updated last year
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆50Updated 7 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆62Updated 3 weeks ago
- Framework for the rapid modeling glycans and glycoproteins.☆28Updated 11 months ago
- RosettaDesign using PyRosetta☆27Updated 5 years ago
- ☆105Updated 5 years ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆56Updated 3 months ago
- Workshop teaching QMMM using Amber☆53Updated 2 years ago
- Cadnano2☆49Updated 10 months ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆10Updated last week
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆59Updated last year
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆18Updated last month
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆43Updated 6 months ago
- Improved antibody structure-based design using inverse folding☆66Updated this week
- PACKMAN: PACKing and Motion ANalysis☆33Updated 2 months ago
- Create DSSP and HSSP files☆83Updated 2 months ago
- Predict the binding affinity of protein-protein complexes from structural data☆103Updated 4 months ago