Alternatives and similar repositories for athena

Users that are interested in athena are comparing it to the libraries listed below

• SSDL-SNU / SNUPI
  SNUPI (Structured NUcleic-acids Programming Interface)
  ☆12Updated 2 months ago
• lorenzo-rovigatti / tacoxDNA
  A collection of tools for DNA modelling
  ☆20Updated last year
• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆20Updated 2 years ago
• lorenzo-rovigatti / oxDNA
  A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
  ☆53Updated 2 weeks ago
• sulcgroup / oxdna-viewer
  oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis
  ☆54Updated last week
• ChemBioHTP / EnzyHTP
  EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling
  ☆23Updated this week
• KULL-Centre / CALVADOS
  ☆59Updated last week
• skblnw / mkvmd_render
  How to make images for publication using VMD
  ☆33Updated 4 years ago
• yakomaxa / PyMOL-Wasm
  PyMOL-wasm port's binary and html/javascript code
  ☆24Updated last year
• YAMACS-SML / YAMACS
  Yasara plugins for Gromacs users
  ☆27Updated last year
• rcsb / py-rcsb-api
  Python interface for RCSB.org API services
  ☆28Updated last week
• forlilab / Ringtail
  Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina
  ☆47Updated 2 weeks ago
• pstansfeld / MemProtMD
  ☆39Updated last week
• PDBeurope / ccdutils
  A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…
  ☆57Updated 2 months ago
• KULL-Centre / _2023_Tesei_IDRome
  ☆41Updated last month
• MDplot / MDplot
  MDplot: Visualise Molecular Dynamics
  ☆28Updated 3 years ago
• RashmiKumari / g_mmpbsa
  MM-PBSA method for GROMACS. For full description, please visit homepage:
  ☆67Updated 2 months ago
• OpenBioSim / biosimspace
  An interoperable Python framework for biomolecular simulation.
  ☆112Updated last month
• CCPBioSim / qmmm-workshop
  Workshop teaching QMMM using Amber
  ☆63Updated 2 years ago
• carlocamilloni / Structural-Bioinformatics
  This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…
  ☆64Updated last month
• maccallumlab / martini_openmm
  ☆54Updated 2 years ago
• BrooksResearchGroup-UM / pyCHARMM-Workshop
  pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…
  ☆69Updated 3 months ago
• Kuhlman-Lab / proteinmpnn
  our in-house version of ProteinMPNN
  ☆17Updated 2 months ago
• osita-sunday-nnyigide / Pras_Server
  Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …
  ☆27Updated 10 months ago
• pritampanda15 / PandaMap
  Ligand-Protein Interaction Mapping
  ☆50Updated 2 weeks ago
• tiwarylab / alphafold2rave
  ☆68Updated 10 months ago
• Valdes-Tresanco-MS / AMDock
  (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
  ☆68Updated last year
• openmm / openmm-setup
  An application for configuring and running simulations with OpenMM
  ☆65Updated 6 months ago
• paiardin / DockingPie
  A Consensus Docking Plugin for PyMOL
  ☆72Updated 11 months ago
• MooersLab / pymolshortcuts
  The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…
  ☆77Updated last year