Alternatives and similar repositories for pytools:

Users that are interested in pytools are comparing it to the libraries listed below

• themantalope / pydendroheatmap
  A tool for generating heatmaps from hierarchically clustered data.
  ☆40Updated 6 years ago
• scikit-bio / scikit-bio-cookbook
  Recipes for bioinformatics analyses with scikit-bio
  ☆41Updated 8 years ago
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆24Updated 10 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 7 months ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 7 months ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• mgalardini / python_plotting_snippets
  Tips and tricks for plotting in python
  ☆28Updated 6 years ago
• EpistasisLab / ebic
  EBIC - AI-based parallel biclustering algorithm
  ☆20Updated 6 years ago
• kbase / kb_sdk
  Build and test new apps for the KBase platform
  ☆28Updated last month
• Edinburgh-Genome-Foundry / SBOL-Visual-CSS
  Draw genetic elements with HTML & CSS
  ☆16Updated 8 years ago
• biosustain / croissance
  Tool for estimating growth rates from microbial growth curves
  ☆28Updated 3 years ago
• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆29Updated 4 years ago
• BioInterchange / Ontologies
  Home of the Genomic Feature and Variation Ontology (GFVO)
  ☆16Updated 4 years ago
• tiagoantao / data-science-teaching
  Teaching data science
  ☆8Updated 8 years ago
• cjlee112 / pygr
  Python graph database framework for bioinformatics
  ☆93Updated 3 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆64Updated 2 weeks ago
• tiagoantao / pygenomics
  A library for next generation genomics in Python 3
  ☆18Updated 6 years ago
• tanghaibao / treecut
  Find nodes in hierarchical clustering that are statistically significant
  ☆28Updated 7 years ago
• luizirber / 2018-python-rust
  This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.
  ☆20Updated 6 years ago
• IQTLabs / squiggle
  📈 DNA Sequence Visualization for Humans
  ☆39Updated 3 years ago
• jdrudolph / uniprot
  command-line and python interface to the uniprot database
  ☆10Updated 9 years ago
• KHP-Informatics / bioindocker15
  [Bio in Docker] Symposium 2015
  ☆21Updated 7 years ago
• AAnzel / MOVIS
  MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dom…
  ☆10Updated 2 years ago
• bgruening / docker-ipython-notebook
  IPython running in a docker container. This image can be used to integrate IPython into Galaxy
  ☆17Updated 9 years ago
• swcarpentry / web-data-python
  Getting and publishing data on the web using Python.
  ☆9Updated 8 years ago
• bigdatagenomics / awesome-adam
  Awesome list of applications that extend Big Data Genomics ADAM. CC0 licensed.
  ☆11Updated 5 years ago
• googlegenomics / datalab-examples
  Example Cloud Datalab iPython Notebooks for genomics use cases.
  ☆25Updated 7 years ago
• adaptivegenome / openge
  An accelerated framework for manipulating and interpreting high-throughput sequencing data
  ☆26Updated 11 years ago
• koonimaru / DeepGMAP
  Deep learning-based prediction of regulatory genome sequences
  ☆12Updated 4 years ago
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆32Updated 11 years ago