laserson / pytoolsLinks
some general useful python tools for genomics
☆20Updated 5 years ago
Alternatives and similar repositories for pytools
Users that are interested in pytools are comparing it to the libraries listed below
Sorting:
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 7 years ago
- Pandas DataFrames for phylogenetics☆74Updated 4 years ago
- OncoPrint visualization☆23Updated 3 years ago
- 📈 DNA Sequence Visualization for Humans☆42Updated 4 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated 2 years ago
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Updated 8 years ago
- Python utilities for Cytoscape and Cytoscape.js☆176Updated 3 years ago
- Recipes for bioinformatics analyses with scikit-bio☆46Updated 3 months ago
- Tips and tricks for plotting in python☆28Updated 7 years ago
- Python Scientific Pipeline Management System☆71Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 5 months ago
- Python graph database framework for bioinformatics☆95Updated 4 years ago
- A minimalist tree plotting library using toyplot graphs☆183Updated 3 weeks ago
- bioinformatics visualization tools with pyviz/bokeh☆20Updated 2 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆175Updated 4 years ago
- High throughput, pain-free big data pipelines.☆30Updated 8 years ago
- Reproducible machine learning analysis of gene expression and alternative splicing data☆125Updated 2 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells☆78Updated 2 years ago
- "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.☆118Updated 3 years ago
- Python-based framework for computational immunomics☆40Updated 4 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆146Updated 5 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆30Updated 5 years ago
- Python implementation of PANDA (Passing Attributes between Networks for Data Assimilation)☆39Updated 7 years ago
- Genome engineering and analysis software☆46Updated 3 years ago
- Tool for estimating growth rates from microbial growth curves☆31Updated 4 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 9 months ago
- Hive Plots in using Python & matplotlib!☆71Updated 7 years ago
- pyAffy: Processing raw data from Affymetrix expression microarrays in Python.☆18Updated 9 years ago
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆22Updated last year