cBioPortal / oncoprintjs

Related projects ⓘ

Alternatives and complementary repositories for oncoprintjs

• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 4 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆15Updated 10 months ago
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 6 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆16Updated last year
• epiviz / epiviz
  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…
  ☆68Updated last year
• SnakeChunks / SnakeChunks
  Modular blocks to build Snakemake workflows for reproducible NGS analyses
  ☆21Updated 5 years ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• HumanCellAtlas / data-bundle-examples
  A repository housing metadata and data files (or links to data files) that are being prepared as sample data bundles for various uses.
  ☆13Updated 2 years ago
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆30Updated 7 years ago
• JEFworks / ubit2
  User-friendly Bioinformatics Tools
  ☆18Updated 3 years ago
• dcroote / singlecell-ige
  Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
  ☆10Updated 3 years ago
• vidboda / MobiDetails
  WebApp for DNA variants interpretation
  ☆13Updated 2 weeks ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆22Updated 6 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 5 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 6 years ago
• arahuja / pytcga
  DEPRECATED: Store and query public TCGA data
  ☆11Updated 8 years ago
• oncojs / lolliplot
  Chart to aid in understanding mutations and their location on a gene.
  ☆22Updated 2 years ago
• vals / python-gprofiler
  ☆12Updated 5 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆33Updated last year
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated 10 months ago
• DataBiosphere / terra-docker
  ☆27Updated last week
• broadinstitute / dsde-deep-learning
  DSDE Deep Learning Club
  ☆40Updated 5 years ago
• staciawyman / blender
  This BLENDER has been sunsetted
  ☆16Updated last month
• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 7 years ago
• nmdp-bioinformatics / flow
  Consensus assembly and variant calling workflow.
  ☆12Updated 9 years ago