Tree hidden Markov model for learning epigenetic states in multiple cell types
☆29Jul 11, 2013Updated 13 years ago
Alternatives and similar repositories for tree-hmm
Users that are interested in tree-hmm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated last year
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- Makes distinct TSS of each gene from a Gencode annotation☆10Oct 19, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22Aug 11, 2020Updated 6 years ago
- ☆17Sep 24, 2013Updated 13 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆44Jul 6, 2021Updated 5 years ago
- Torch implementation of the Collobert's SENNA system for NER.☆13Jun 27, 2016Updated 10 years ago
- Log command line events to a graph database :)☆13Mar 12, 2016Updated 10 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 10 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- example ruffus pipeline☆18Sep 30, 2011Updated 14 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- Make and use nested directory trees corresponding to combinatorial choices of parameters☆20Apr 23, 2017Updated 9 years ago
- ☆16May 8, 2023Updated 3 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 4 years ago
- Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)☆22Jun 16, 2026Updated 3 months ago
- scikit-procrustes, a collection of solvers for the (Weighted) Orthogonal Procrustes Problem☆11Apr 3, 2019Updated 7 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆23Jan 23, 2022Updated 4 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆14Jul 12, 2024Updated 2 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package for Conditional Random Fields☆20Oct 22, 2025Updated 11 months ago
- Fast algorithms for GLM-PCA.☆18Mar 12, 2025Updated last year
- Common Code Workflow tutorial on Theano☆16Oct 29, 2015Updated 10 years ago
- An R package to plot maps of clone distributions in somatic evolution☆20Aug 3, 2026Updated last month
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆12Jan 25, 2016Updated 10 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- Benchmarks of the H2O Ensemble R interface (H2O 2.0).☆14Nov 4, 2020Updated 5 years ago
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- ☆11Oct 16, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 4 months ago
- ogrisel's utility extensions for scikit-learn☆24Jul 31, 2013Updated 13 years ago
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- Documentation for the .NET Bio project☆11Sep 20, 2017Updated 9 years ago
- Tool for modelling of mitochondrial heteroplasmy☆21Jul 16, 2024Updated 2 years ago
- ☆16Jan 2, 2024Updated 2 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆85Updated this week