uci-cbcl / tree-hmmLinks
Tree hidden Markov model for learning epigenetic states in multiple cell types
☆28Updated 12 years ago
Alternatives and similar repositories for tree-hmm
Users that are interested in tree-hmm are comparing it to the libraries listed below
Sorting:
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- Reproducible machine learning analysis of gene expression and alternative splicing data☆125Updated 2 years ago
- We have moved to https://github.com/limix/limix.☆23Updated 8 years ago
- Deep neural network for predicting methylation states of single cells☆13Updated 8 years ago
- Clustering through Imputation and Dimensionality Reduction☆63Updated 8 years ago
- ☆21Updated 8 years ago
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Updated 8 years ago
- Bayesian Consensus Clustering, packaged up from code by Eric F. Lock☆19Updated 2 years ago
- Yet Another Motif Discovery Algorithm☆53Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 8 years ago
- Shape analysis of high-throughput data☆19Updated 9 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 9 years ago
- BitSeq code☆16Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆59Updated 3 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- RSS: Regression with Summary Statistics☆51Updated last year
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 2 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Updated 8 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 8 years ago
- A collection of papers and books that Storey Lab members should read and others may find useful☆47Updated 10 years ago
- python script to programmatically enrich your data using Enrichr API☆12Updated 8 years ago
- ☆13Updated 6 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- DYNamics Agnostic Network MOdels☆18Updated 7 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- Out-of-Core Principal Component Analysis☆19Updated 7 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago