Alternatives and similar repositories for tree-hmm

Users that are interested in tree-hmm are comparing it to the libraries listed below

• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 9 years ago
• daquang / YAMDA
  Yet Another Motif Discovery Algorithm
  ☆53Updated 6 years ago
• VCCRI / CIDR
  Clustering through Imputation and Dimensionality Reduction
  ☆63Updated 7 years ago
• PMBio / limix
  We have moved to https://github.com/limix/limix.
  ☆24Updated 7 years ago
• stephenslab / rss
  RSS: Regression with Summary Statistics
  ☆50Updated 10 months ago
• kieranrcampbell / ouijaflow
  Probabilistic single-cell pseudotime with Edward+Tensorflow
  ☆12Updated 7 years ago
• PMBio / limix-backup
  ☆45Updated 9 years ago
• greenelab / adage
  Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …
  ☆61Updated 9 years ago
• SUwonglab / CoupledNMF
  Coupled clustering of single cell genomic data
  ☆12Updated 3 years ago
• ramzan1990 / sequence2vec
  ☆21Updated 8 years ago
• YeoLab / flotilla
  Reproducible machine learning analysis of gene expression and alternative splicing data
  ☆126Updated 2 years ago
• BitSeq / BitSeq
  BitSeq code
  ☆16Updated 4 years ago
• arogozhnikov / demuxalot
  Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
  ☆24Updated 3 weeks ago
• tare / Splotch
  Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data
  ☆21Updated 2 months ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆56Updated 2 years ago
• ttriche / bayesCC
  Bayesian Consensus Clustering, packaged up from code by Eric F. Lock
  ☆19Updated 2 years ago
• snewhouse / enrichr-api
  python script to programmatically enrich your data using Enrichr API
  ☆12Updated 8 years ago
• GGiecold-zz / ECLAIR
  Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …
  ☆14Updated 8 years ago
• sirajulsalekin / DeepSNR
  Base-pair resolution detection of transcription factor binding site by deep deconvolutional network
  ☆10Updated 7 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆44Updated 5 years ago
• cangermueller / deepcpg_legacy
  Deep neural network for predicting methylation states of single cells
  ☆13Updated 8 years ago
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆45Updated last year
• msantolini / dynamo
  DYNamics Agnostic Network MOdels
  ☆18Updated 7 years ago
• QData / DeepMotif
  Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications
  ☆46Updated 6 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 7 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 6 years ago
• kieranrcampbell / embeddr
  This repository is retired software
  ☆13Updated 9 years ago