uci-cbcl / tree-hmm
Tree hidden Markov model for learning epigenetic states in multiple cell types
☆28Updated 11 years ago
Alternatives and similar repositories for tree-hmm:
Users that are interested in tree-hmm are comparing it to the libraries listed below
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 5 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- Clustering through Imputation and Dimensionality Reduction☆62Updated 7 years ago
- Deep neural network for predicting methylation states of single cells☆13Updated 8 years ago
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Updated 8 years ago
- ☆45Updated 8 years ago
- ☆21Updated 9 years ago
- Out-of-Core Principal Component Analysis☆18Updated 7 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 2 years ago
- Yet Another Motif Discovery Algorithm☆52Updated 6 years ago
- RSS: Regression with Summary Statistics☆50Updated 4 months ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- ☆21Updated 5 years ago
- ☆19Updated 7 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- ☆11Updated 7 years ago
- Shape analysis of high-throughput data☆19Updated 8 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 7 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Updated 8 years ago
- Bayesian Factorization with Side Information in C++ with Python wrapper☆41Updated 3 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 5 years ago
- Source code for integrative nonnegative matrix factorization☆17Updated 6 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Updated 5 years ago
- ☆21Updated 7 years ago
- DEPRECATED: Store and query public TCGA data☆11Updated 8 years ago
- ☆25Updated 5 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 8 years ago
- ☆11Updated 2 years ago