kensho-technologies / sequence_alignLinks
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
☆75Updated 11 months ago
Alternatives and similar repositories for sequence_align
Users that are interested in sequence_align are comparing it to the libraries listed below
Sorting:
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Updated 2 weeks ago
- Fast DNA manipulation for Rust and Python☆61Updated 2 weeks ago
- A small rust-based data loader☆36Updated 2 months ago
- Modular Rust transformer/LLM library using Candle☆38Updated last year
- Collection of succinct data structures in Rust☆101Updated 6 months ago
- Graph model execution API for Candle☆17Updated 6 months ago
- Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance cal…☆109Updated 2 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆19Updated 2 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆49Updated 3 weeks ago
- Parallelized zip archive reading☆38Updated last year
- Exon is an OLAP query engine specifically for biology and life science applications.☆71Updated 10 months ago
- Parallel Barnes-Hut t-SNE implementation written in Rust.☆89Updated 6 months ago
- Rust re-implementation of OpenFST - library for constructing, combining, optimizing, and searching weighted finite-state transducers (FST…☆178Updated 6 months ago
- Alignment-based filtering CLI tool☆60Updated 3 months ago
- ☆14Updated 2 years ago
- Simple succinct data structures (in Rust)☆53Updated last month
- Parallel Construction of Suffix Arrays in Rust☆27Updated 9 months ago
- k-Medoids clustering in Rust with the FasterPAM algorithm☆27Updated 4 months ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Updated 5 years ago
- A library for easy, fast, and efficient reading & writing of PLINK Bed files☆82Updated 10 months ago
- A text embedding extension for the Polars Dataframe library.☆29Updated last year
- Analyzes whole genome sequencing data for gene-editing verification☆10Updated 3 months ago
- Calculation of euclidean distance between vectors, with SIMD☆12Updated 2 years ago
- Blitzing Fast CTC Beam Search Decoder☆185Updated 3 months ago
- Open compressed files in Python☆81Updated 3 months ago
- protein utilities in Rust☆32Updated 2 months ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- Rust binding to crfsuite☆25Updated last week
- Locality Sensitive Hashing in Rust with Python bindings☆121Updated 2 years ago
- Neural syntax annotator, supporting sequence labeling, lemmatization, and dependency parsing.☆80Updated 2 years ago