pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.
☆13Sep 15, 2022Updated 3 years ago
Alternatives and similar repositories for emacs-pdb-mode
Users that are interested in emacs-pdb-mode are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives☆12Nov 15, 2022Updated 3 years ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 3 years ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆14Oct 19, 2022Updated 3 years ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- Very simple script for EPU users which adds beam tilt classes to the star file☆11Nov 3, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Documentations for RELION☆15Mar 13, 2026Updated 3 months ago
- Web application for monitor EM results☆13Jun 11, 2026Updated last week
- Cryo-EM data viewer in napari☆14Dec 1, 2020Updated 5 years ago
- Read and write files and manipulate data in the MRC2014 format☆17May 1, 2026Updated last month
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 9 years ago
- G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://g…☆46Apr 9, 2026Updated 2 months ago
- ☆17May 11, 2026Updated last month
- Screen interactions with AlphaFold Multimer☆14Mar 10, 2025Updated last year
- Amortized inference for ab initio heterogeneous cryo-EM reconstruction☆41Apr 11, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- IMOD model files as pandas dataframes in Python☆12Jun 26, 2025Updated 11 months ago
- 📖 mmCIF support for hybrid/integrative models☆26May 4, 2026Updated last month
- A Gene Finder framework for Julia.☆16Jan 16, 2026Updated 5 months ago
- ☆10Jun 2, 2026Updated 2 weeks ago
- ☆12Jan 27, 2025Updated last year
- Wrapper to protein secondary structure calculation packages☆13Apr 3, 2025Updated last year
- A curated list of the best bioinformatics books, all in one place☆13Oct 12, 2015Updated 10 years ago
- Conventions for 3DEM software packages☆19Feb 22, 2022Updated 4 years ago
- Julia tools for reading Crystallographic Information Framework (CIF) files and dictionaries☆15Apr 10, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Differentiably evaluate energies using SMIRNOFF force fields☆20Jun 11, 2026Updated last week
- ☆23Nov 15, 2025Updated 7 months ago
- Normal Mode Analysis for Macromolecules☆18Apr 1, 2017Updated 9 years ago
- ☆18Oct 5, 2024Updated last year
- ☆31Aug 16, 2021Updated 4 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆186Apr 8, 2026Updated 2 months ago
- pdbTool: An object-oriented Julia tool to parse PDB files and work with them☆17Jan 24, 2021Updated 5 years ago
- Using the Stan statistical modelling language from Clojure using the CmdStan CLI☆11May 1, 2025Updated last year
- RELION external reconstruct functionality☆11Sep 11, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆19Jan 23, 2026Updated 4 months ago
- ☆10Nov 11, 2023Updated 2 years ago
- Quantum Refinement Module☆34Jun 11, 2026Updated last week
- Symmetric matrix as a list of the values in its upper or lower triangular part. Useful for representing pairwise measures or comparisons …☆20Sep 14, 2023Updated 2 years ago
- A library to interface with STAN.☆17Nov 22, 2018Updated 7 years ago
- Multiple sequence alignment visualizer☆35Jan 26, 2023Updated 3 years ago
- Library that handles atom structures as XYZ files and properties derived from it.☆18Aug 5, 2025Updated 10 months ago