An AFM image analysis program to batch process data and obtain statistics from images
☆75Updated this week
Alternatives and similar repositories for TopoStats
Users that are interested in TopoStats are comparing it to the libraries listed below
Sorting:
- A library for loading various atomic force microscopy file formats.☆20Feb 3, 2026Updated 3 weeks ago
- Fitting and machine-learning based rating of AFM force-indentation data☆18May 1, 2025Updated 9 months ago
- Atomic Force Microscopy Analysis Platform☆25Updated this week
- Machine learning molecule graphs from atomic force microscopy images.☆13May 25, 2023Updated 2 years ago
- GUI for AFM data analysis with an emphasis on biological specimens☆14Jan 22, 2026Updated last month
- Python library for reading common AFM file formats☆12Feb 4, 2026Updated 3 weeks ago
- Gwyddion Python scripts to run in pygwy and one standalone script.☆12Feb 2, 2021Updated 5 years ago
- Library to parse and process Nanoscope Dimension AFM files.☆10Jan 6, 2019Updated 7 years ago
- Python scripting library for generating designs readable by scadnano.☆16Updated this week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- PyFMGUI is an application for the analysis of force microscopy data capable of analyzing Nanoscope and JPK AFM files.☆11Sep 24, 2024Updated last year
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- A GUI for automated sequence design of wireframe scaffolded DNA origami☆14Nov 3, 2021Updated 4 years ago
- SNUPI (Structured NUcleic-acids Programming Interface)☆15Feb 19, 2025Updated last year
- ☆18Mar 5, 2017Updated 8 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- DIY Atomic Force Microscope☆15Sep 29, 2015Updated 10 years ago
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- Python tool for auto-breaking DNA origami staples☆16Jan 4, 2026Updated last month
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA☆20Jul 7, 2022Updated 3 years ago
- 2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy☆25Dec 19, 2023Updated 2 years ago
- This repository contains all documentation for the OpenAFM project, and links to the repositories for software, firmware, mechanics and e…☆21Oct 18, 2016Updated 9 years ago
- Linking napari layers with Matplotlib plots☆43Feb 2, 2026Updated 3 weeks ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 9 months ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Nov 14, 2024Updated last year
- oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis☆54Feb 19, 2026Updated last week
- A collection of tools for DNA modelling☆23Aug 9, 2025Updated 6 months ago
- Classical force field model for simulating atomic force microscopy images.☆65Feb 20, 2026Updated last week
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆22Feb 12, 2026Updated 2 weeks ago
- ☆23Oct 22, 2024Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Force fields in various formats☆26May 2, 2024Updated last year
- Reference implementation of the Graph Exchange File Format☆36Feb 4, 2026Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆60Jul 18, 2025Updated 7 months ago
- 3D shape analysis using deep learning☆29Oct 8, 2025Updated 4 months ago