johnchase / cual-id
A package for creating and managing sample identifiers in comparative -omics datasets.
☆23Updated 7 years ago
Related projects: ⓘ
- WDL plugin for pytest☆48Updated last year
- Write-once-read-many table for large datasets.☆28Updated 11 months ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆17Updated 5 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 8 years ago
- cache packages permanently☆12Updated 2 months ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Curated collection of open-source bioinformatics tools☆28Updated 5 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆52Updated 8 months ago
- Efficient handling of FASTQ files from Python☆50Updated 2 weeks ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- a simple read-only sequence database, designed for short reads☆62Updated 7 months ago
- X things you should take into consideration if you code for big data analysis☆24Updated 6 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- Parse Illumina sample sheets with Python☆49Updated 6 months ago
- ☆34Updated last year
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 6 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 3 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- Git mirror of Bioconductor SRAdb package☆21Updated 6 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- SQL support plugin for Nextflow☆25Updated 8 months ago
- Python client for GA4GH htsget protocol☆15Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆19Updated 4 months ago
- conda recipes for genomic data☆85Updated 3 years ago
- Monitor computational workflows in real time☆65Updated 3 months ago
- Awesome resources related to Galaxy project☆11Updated 2 years ago
- Simple tool to verticalize text delimited files.☆35Updated 4 months ago
- Toil workflows for common genomic pipelines☆32Updated 4 years ago
- reference free variant assembly☆32Updated last year