Python code to extract features from Protein sequences for Machine Learning/Deep Learning
☆21Mar 26, 2022Updated 4 years ago
Alternatives and similar repositories for Protein-feature-extraction
Users that are interested in Protein-feature-extraction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python application for finding apo and holo structures for user-defined protein-ligand interactions☆10Feb 7, 2023Updated 3 years ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- MVP (Qi et al 2021) source code☆17May 11, 2021Updated 5 years ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 5 years ago
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆14Nov 18, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆18Oct 20, 2022Updated 3 years ago
- Image classification using SVM, KNN, Bayes, Adaboost, Random Forest and CNN.Extracting features and reducting feature dimension using T-S…☆13Aug 12, 2020Updated 5 years ago
- An empirical analysis of the efficacy of several state-of-the-art methods on imbalanced Multilabel Classification datasets☆14May 28, 2018Updated 8 years ago
- Python class to easily deal with protein networks.☆21May 23, 2020Updated 6 years ago
- ☆22Mar 2, 2026Updated 4 months ago
- ☆12Feb 17, 2023Updated 3 years ago
- Fold Protein Recognition☆10Sep 3, 2020Updated 5 years ago
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆27Jul 15, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Biobb_amber is a BioBB category for AMBER MD package.☆15Updated this week
- ☆18Oct 31, 2023Updated 2 years ago
- A Python script to translate DNA sequences to protein sequences☆27Oct 4, 2017Updated 8 years ago
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆24Jun 3, 2023Updated 3 years ago
- implement an multi-label algorithm by ranking system through SVM☆13Nov 2, 2018Updated 7 years ago
- Predicting protein subcellular localization using deep learning☆16Sep 13, 2019Updated 6 years ago
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- HESML Java software library of ontology-based semantic similarity measures and information content models☆16Oct 13, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆18Nov 24, 2019Updated 6 years ago
- Precision-Recall based assessment for CAFA☆16Dec 6, 2019Updated 6 years ago
- dMaSIF implementation for google colab☆36Mar 24, 2023Updated 3 years ago
- ☆51Dec 2, 2024Updated last year
- ☆38Aug 8, 2023Updated 2 years ago
- My computational biology course as it evolves in real time☆14Aug 31, 2021Updated 4 years ago
- Spacemacs layer for https://github.com/dzop/emacs-jupyter☆14May 27, 2023Updated 3 years ago
- 🪝 What's the latest version for each database?☆30Updated this week
- Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides☆10Dec 13, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 3 months ago
- ☆19Oct 8, 2020Updated 5 years ago
- A Python 3 version of the protein descriptor package propy☆48Feb 8, 2023Updated 3 years ago
- Convolutional Xformers for Vision☆26Jun 14, 2022Updated 4 years ago
- Computes a molecular graph for protein structures.☆59Updated this week
- Code for the paper "Resource-efficient quantum algorithm for protein folding"☆16Jun 23, 2025Updated last year
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated 11 months ago