Alternatives and similar repositories for agentomics-ml

Users that are interested in agentomics-ml are comparing it to the libraries listed below

• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆121Updated last month
• JoshuaChou2018 / AutoBA
  An AI Agent for Fully Automated Multi-omic Analyses
  ☆198Updated last year
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆116Updated this week
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆124Updated last month
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆93Updated 3 months ago
• snap-stanford / SATURN
  ☆143Updated last year
• jasonHKU0907 / proteome-phenome-atlas
  ☆70Updated 8 months ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆31Updated 11 months ago
• Winnie09 / GPTCelltype
  ☆213Updated last year
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆30Updated 3 years ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆87Updated 3 years ago
• stat115 / Lab_2020
  Repository for all labs for STAT115 for 2020
  ☆50Updated 5 years ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆98Updated last month
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆109Updated 2 years ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆81Updated last year
• evanpeikon / Python_Fundamentals_Biology
  Python Fundamentals for Biologists
  ☆38Updated last year
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆168Updated last month
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆88Updated last year
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆132Updated 9 months ago
• OpenGene / scrnapip
  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
  ☆112Updated 2 years ago
• lanagarmire / Asgard
  ☆44Updated last year
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆98Updated 8 months ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆95Updated 4 years ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆74Updated 8 months ago
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆277Updated 8 months ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆56Updated 5 months ago
• MDhewei / Bioinforbricklayer
  Learning materials, files and codes for bioinformatics
  ☆187Updated 2 years ago
• kekegg / DLEPS
  A Deep Learning based Efficacy Prediction System for drug discovery
  ☆73Updated 2 years ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆233Updated last month