A simple implementation of the circular binary segmentation algorithm in python
☆26Jan 3, 2019Updated 7 years ago
Alternatives and similar repositories for cbs
Users that are interested in cbs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆21May 9, 2019Updated 7 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- ☆15Sep 13, 2024Updated last year
- ☆11Jun 14, 2023Updated 2 years ago
- Python interface to cd-hit☆10Feb 26, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆44Nov 13, 2024Updated last year
- ☆16Apr 17, 2026Updated last month
- 有趣的数学☆13Mar 7, 2021Updated 5 years ago
- ☆23Jul 23, 2023Updated 2 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆160Feb 12, 2026Updated 3 months ago
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆13Mar 4, 2026Updated 2 months ago
- ☆12Dec 15, 2020Updated 5 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated last month
- TIDDIT - structural variant calling☆10Dec 8, 2025Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12Nov 21, 2023Updated 2 years ago
- An automatic classification tool for PVS1 interpretation of null variants☆46Mar 4, 2024Updated 2 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Inspired from the paper "Show Attend and Tell". This project's aim was to train a neural network which can provide descriptive text for a…☆13Feb 7, 2021Updated 5 years ago
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated last month
- 天津医科大学,生物医学工程与技术学院 ,《Linux系统概论》课程资料☆18Mar 5, 2026Updated 2 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- ☆40Jan 14, 2026Updated 4 months ago
- Supplementary files for our Aneuploidy Detection paper☆10Jul 5, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Apr 20, 2022Updated 4 years ago
- ☆125Sep 5, 2023Updated 2 years ago
- This repository includes my lecture notes for some of the courses I have been teaching at UC Irvine. I will keep updating them over time.…☆14Apr 27, 2021Updated 5 years ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- ☆11May 27, 2024Updated last year
- QDNAseq package for Bioconductor☆54Jul 27, 2024Updated last year
- Protect your python source code with one command.☆10Mar 12, 2020Updated 6 years ago
- Lui is a lua MVVM framework based on IUP gui library and Lockout.lua (Knockout port)☆11May 5, 2013Updated 13 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Apr 15, 2018Updated 8 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆41May 11, 2026Updated last week
- MuRaL is a deep learning framework for building base-resolution mutation rate maps.☆21Nov 20, 2025Updated 6 months ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 5 months ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago