jarekbryk / localblastLinks
A short tutorial on how to run local BLAST.
☆21Updated 5 years ago
Alternatives and similar repositories for localblast
Users that are interested in localblast are comparing it to the libraries listed below
Sorting:
- ☆27Updated 5 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Merge transcriptome assemblies☆31Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆62Updated last year
- ☆23Updated 6 years ago
- ☆52Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- visualising sequence similarity with Circos☆40Updated 5 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- ☆35Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated last year
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- A collection of modules and sub-workflows for Nextflow☆26Updated 3 weeks ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- ☆31Updated last year
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆26Updated 3 weeks ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago