jandot / ruby-ensembl-api
A ruby API to the Ensembl database
☆40Updated 13 years ago
Alternatives and similar repositories for ruby-ensembl-api:
Users that are interested in ruby-ensembl-api are comparing it to the libraries listed below
- This plugins is intended to wrap the common software used for Next Generation Sequencing data☆28Updated 2 years ago
- Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-☆33Updated 5 years ago
- bioruby☆379Updated 3 weeks ago
- An extensible Ruby on Rails web-service application and database for visualising HTGS data☆18Updated 11 years ago
- HTML5 canvas genomic graphics library☆76Updated 5 years ago
- Ruby UCSC API: An API for the UCSC Genome Database☆19Updated 2 years ago
- Smart VCF parser DSL☆82Updated 2 years ago
- Understand your transcriptome assembly☆101Updated last year
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- An ultra light YAML-based pipeline execution engine☆20Updated 7 years ago
- Fast big data XML parser and library, written in Ruby☆17Updated 9 years ago
- Interactive web-based genome browser.☆227Updated 5 years ago
- A shell script which implements GATK pipeline for variant calling.☆15Updated 10 years ago
- the Generic Genome Browser☆49Updated last year
- The MG-RAST pipeline☆24Updated 2 years ago
- Rails frontend to The Genome Institute's drug gene interaction database.☆95Updated 2 years ago
- a simple read-only sequence database, designed for short reads☆20Updated 8 years ago
- A powerful toolset for genome arithmetic.☆141Updated 3 years ago
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Updated 11 years ago
- Powerful long read aligner for Ruby☆14Updated 2 months ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Updated 6 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated last week
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- CloudBioLinux: configure virtual (or real) machines with tools for biological analyses☆257Updated last year
- A Cytoscape app for importing KGML(KEGG pathway XML)☆23Updated 3 weeks ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 6 years ago
- ☆49Updated 2 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆126Updated 2 years ago