Alternatives and similar repositories for ruby-ensembl-api:

Users that are interested in ruby-ensembl-api are comparing it to the libraries listed below

• rjpbonnal / bioruby-ngs
  This plugins is intended to wrap the common software used for Next Generation Sequencing data
  ☆28Updated 2 years ago
• rjpbonnal / bioruby-samtools
  Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
  ☆33Updated 5 years ago
• bioruby / bioruby
  bioruby
  ☆378Updated last year
• chmille4 / Scribl
  HTML5 canvas genomic graphics library
  ☆76Updated 5 years ago
• danmaclean / gee_fu
  An extensible Ruby on Rails web-service application and database for visualising HTGS data
  ☆18Updated 10 years ago
• misshie / bioruby-ucsc-api
  Ruby UCSC API: An API for the UCSC Genome Database
  ☆19Updated 2 years ago
• vcflib / bio-vcf
  Smart VCF parser DSL
  ☆82Updated 2 years ago
• Jverma / GATK-pipeline
  A shell script which implements GATK pipeline for variant calling.
  ☆15Updated 10 years ago
• arq5x / bedtools
  A powerful toolset for genome arithmetic.
  ☆140Updated 3 years ago
• fstrozzi / bioruby-pipengine
  An ultra light YAML-based pipeline execution engine
  ☆20Updated 7 years ago
• pjotrp / blastxmlparser
  Fast big data XML parser and library, written in Ruby
  ☆17Updated 9 years ago
• tanghaibao / trimReads
  Utility programs to trim or sort Illumina reads with adapter sequences
  ☆15Updated 11 years ago
• lh3 / fermi
  A WGS de novo assembler based on the FMD-index for large genomes
  ☆75Updated 11 years ago
• GMOD / GBrowse
  the Generic Genome Browser
  ☆49Updated last year
• ctb / screed
  a simple read-only sequence database, designed for short reads
  ☆20Updated 8 years ago
• dasmoth / dalliance
  Interactive web-based genome browser.
  ☆227Updated 5 years ago
• blahah / transrate
  Understand your transcriptome assembly
  ☆101Updated 10 months ago
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆84Updated 6 years ago
• Ensembl / WiggleTools
  Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
  ☆146Updated 2 months ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆194Updated 3 years ago
• homologus / Pandoras-Toolbox-for-Bioinformatics
  A collection of well-known bioinformatics programs.
  ☆25Updated 9 years ago
• mcfrith / last-rna
  ☆49Updated 2 years ago
• opencb / genome-maps
  An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM an…
  ☆39Updated 6 years ago
• brentp / bio-playground
  miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
  ☆182Updated 6 years ago
• sanger / sequencescape
  Web based LIMS
  ☆89Updated this week
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 3 weeks ago
• wanpinglee / MOSAIK
  reference-guided aligner for next-generation sequencing technologies
  ☆55Updated 8 years ago
• COMBINE-lab / RapMap
  Rapid sensitive and accurate read mapping via quasi-mapping
  ☆89Updated 4 years ago
• kojix2 / ruby-minimap2
  Powerful long read aligner for Ruby
  ☆14Updated 2 weeks ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆58Updated 6 years ago