Alternatives and similar repositories for sequencescape

Users that are interested in sequencescape are comparing it to the libraries listed below

• BU-ISCIII / iskylims
  is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and report…
  ☆76Updated 3 weeks ago
• dgidb / dgidb
  Rails frontend to The Genome Institute's drug gene interaction database.
  ☆95Updated 3 weeks ago
• c3g / GenPipes_Docs
  GenPipes Read the Docs repository
  ☆22Updated last week
• maxplanck-ie / parkour
  Moved to: https://github.com/maxplanck-ie/parkour2
  ☆33Updated 3 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• genome / genome
  Core modules used by the GMS
  ☆66Updated last year
• DECIPHER-genomics / Genoverse
  HTML5 scrollable genome browser
  ☆111Updated last year
• MatthewHiggins2017 / bioconda-PrimedRPA
  ☆24Updated last year
• danmaclean / gee_fu
  An extensible Ruby on Rails web-service application and database for visualising HTGS data
  ☆18Updated 11 years ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆62Updated 2 weeks ago
• biosql / biosql
  ☆91Updated 6 years ago
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆92Updated last month
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• Oshlack / JAFFA
  JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
  ☆98Updated 2 months ago
• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆84Updated this week
• Steven-N-Hart / vcf-miner
  VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
  ☆37Updated 5 years ago
• daler / metaseq
  Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
  ☆87Updated 5 years ago
• vcflib / bio-vcf
  Smart VCF parser DSL
  ☆83Updated 3 years ago
• linsalrob / EdwardsLab
  Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edw…
  ☆40Updated 2 weeks ago
• liyao001 / BioQueue
  A novel pipeline framework to accelerate bioinformatics analysis
  ☆30Updated 2 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆82Updated 2 weeks ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• ncbi / magicblast
  ☆37Updated 4 months ago
• pcingola / SnpSift
  ☆38Updated 6 months ago
• bio-ontology-research-group / phenomenet-vp
  A phenotype-based tool for variant prioritization in WES and WGS data
  ☆38Updated 2 years ago
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated this week
• BioContainers / specs
  BioContainers specifications
  ☆52Updated 2 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆49Updated this week
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 8 years ago