Alternatives and similar repositories for sequencescape

Users that are interested in sequencescape are comparing it to the libraries listed below

• BU-ISCIII / iskylims
  is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and report…
  ☆82Updated last month
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆93Updated last week
• genome-in-a-bottle / giab_tools_methods
  This repository contains a list of tools or methods that have been used in GIAB analysis
  ☆30Updated 5 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• maxplanck-ie / parkour
  Moved to: https://github.com/maxplanck-ie/parkour2
  ☆33Updated 3 years ago
• rjpbonnal / bioruby-samtools
  Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
  ☆33Updated 6 years ago
• vcflib / bio-vcf
  Smart VCF parser DSL
  ☆83Updated 3 years ago
• dgidb / dgidb
  Rails frontend to The Genome Institute's drug gene interaction database.
  ☆95Updated 2 months ago
• biosql / biosql
  ☆91Updated 6 years ago
• DECIPHER-genomics / Genoverse
  HTML5 scrollable genome browser
  ☆111Updated 2 years ago
• yeban / ncbi-blast-dbs
  Fast download BLAST databases from NCBI.
  ☆35Updated last year
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 7 years ago
• SBIMB / StellarPGx
  Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
  ☆34Updated 2 weeks ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 5 months ago
• Steven-N-Hart / vcf-miner
  VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
  ☆37Updated 5 years ago
• pcingola / SnpSift
  ☆38Updated 8 months ago
• gear-genomics / indigo
  Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
  ☆36Updated 2 months ago
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• GMOD / Apollo
  Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
  ☆136Updated 4 months ago
• ncbi / magicblast
  ☆36Updated 6 months ago
• zichner / primerDesign
  A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
  ☆46Updated 8 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated 2 months ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆63Updated 3 weeks ago
• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆84Updated last week
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆64Updated 7 years ago
• aquaskyline / SOAP3-dp
  To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…
  ☆31Updated last year
• danmaclean / gee_fu
  An extensible Ruby on Rails web-service application and database for visualising HTGS data
  ☆18Updated 11 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago