LihongLab / Suppl-data-BenchmarkLinks
☆11Updated 3 years ago
Alternatives and similar repositories for Suppl-data-Benchmark
Users that are interested in Suppl-data-Benchmark are comparing it to the libraries listed below
Sorting:
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- Functional Embedding of Gene Signatures☆48Updated last year
- ☆28Updated 10 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 3 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆74Updated 3 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Updated 4 months ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17Updated 2 years ago
- flexible CDR based distance metrics☆69Updated last month
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Updated 4 months ago
- scDrug: From scRNA-seq to Drug Repositioning☆37Updated 2 years ago
- ☆47Updated 3 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- A DIY guide to gene ontology, pathway, and gene set enrichment analysis☆26Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆89Updated 3 years ago
- PRedictor of IMmunogenic Epitopes☆25Updated 4 months ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Updated this week
- ☆17Updated 4 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆32Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆74Updated last week
- bioinformatics plotting and tools☆60Updated last year
- Collection of papers related to BCR repertoire analyses☆19Updated 4 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 3 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Updated 5 months ago
- HLA-II ligand predictor.☆46Updated 2 years ago