Alternatives and similar repositories for jagged

Users that are interested in jagged are comparing it to the libraries listed below

• pdebuyl / use_ipynb_git

  View on GitHub
  How to use nbstripout
  ☆12Mar 16, 2020Updated 5 years ago
• OpenHumans / gennotes

  View on GitHub
  GenNotes – public consensus annotation of genetic variants
  ☆11Mar 27, 2016Updated 9 years ago
• minrk / jskernel

  View on GitHub
  ☆24Mar 16, 2015Updated 10 years ago
• ssadedin / ximmer

  View on GitHub
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Jan 28, 2026Updated 2 weeks ago
• llllllllll / adt

  View on GitHub
  Algebraic data types for python
  ☆21Feb 10, 2017Updated 9 years ago
• rougier / spatial-computation

  View on GitHub
  Spatial computation
  ☆21Oct 13, 2021Updated 4 years ago
• bayer-int / .github

  View on GitHub
  Helpful workflow templates for GitHub Actions at Bayer (needs to be public for the templates)
  ☆21Jul 24, 2024Updated last year
• TheJacksonLaboratory / pyBedGraph

  View on GitHub
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆23Apr 3, 2020Updated 5 years ago
• biotite-dev / ammolite

  View on GitHub
  Visualize structure data from Biotite with PyMOL
  ☆26Mar 16, 2025Updated 11 months ago
• biopython / biopython_docker

  View on GitHub
  Dockerfiles to build Biopython instances
  ☆28Aug 30, 2016Updated 9 years ago
• binder-project / example-requirements

  View on GitHub
  A Binder-compatible repo with a requirements.txt file
  ☆26Aug 18, 2017Updated 8 years ago
• alimanfoo / vcfnp

  View on GitHub
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Jun 27, 2017Updated 8 years ago
• Coayala / MetaboDirect

  View on GitHub
  A comprehensive command-line based pipeline for the analysis of direct injection FT-ICR mass spectrometry data
  ☆12Feb 3, 2026Updated last week
• vejnar / FONtools

  View on GitHub
  JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage
  ☆13Jun 11, 2025Updated 8 months ago
• katrinleinweber / Git-for-bio-scientists

  View on GitHub
  Presentation about digital lab journalling with Git
  ☆34Aug 22, 2022Updated 3 years ago
• dracos / double-metaphone

  View on GitHub
  A Python implementation of the Double Metaphone algorithm
  ☆61Nov 3, 2010Updated 15 years ago
• networkl / networkl

  View on GitHub
  NetworkL is a Python package which extends the scope of the NetworkX package to (L)arge time-varying graphs. It supports the manipulation…
  ☆28May 11, 2021Updated 4 years ago
• BravoPapa / OmegaGPIO

  View on GitHub
  Code for using the GPIO pins on the Onion Omega board
  ☆10Jan 29, 2017Updated 9 years ago
• gifford-lab / ec2-launcher-pro

  View on GitHub
  A tool that lauches docker jobs on Amazon EC2.
  ☆10May 7, 2019Updated 6 years ago
• broadinstitute / trexplorer-catalog

  View on GitHub
  Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]
  ☆17Jan 30, 2026Updated 2 weeks ago
• eudoxos / minieigen

  View on GitHub
  Boost::Python wrapper for parts of the Eigen c++ library
  ☆33Apr 26, 2023Updated 2 years ago
• Clinical-Genomics / chanjo

  View on GitHub
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated this week
• PacificBiosciences / pbcore

  View on GitHub
  A Python library for reading and writing PacBio® data files
  ☆41Dec 11, 2025Updated 2 months ago
• thomas-haslwanter / CSS_ipynb

  View on GitHub
  IPython notebooks for "Computer Simulations of Sensory Systems"
  ☆10Nov 15, 2024Updated last year
• nekonaute / pogobot

  View on GitHub
  Pogobot is an open-source open-hardware robotic platform for swarm robotics
  ☆15Dec 12, 2025Updated 2 months ago
• ratt-ru / montblanc

  View on GitHub
  GPU-accelerated RIME implementations. An offshoot of the BIRO projects, and one of the foothills of Mt Exaflop.
  ☆10Dec 10, 2025Updated 2 months ago
• sje30 / latex101

  View on GitHub
  One hour lecture to introduce LaTeX to maths undergraduates.
  ☆10Oct 2, 2020Updated 5 years ago
• xuxif / DeepMEI

  View on GitHub
  A CNN model to identify MEIs in WGS
  ☆12Mar 4, 2025Updated 11 months ago
• OpenHumans / genevieve

  View on GitHub
  Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes
  ☆10Aug 2, 2016Updated 9 years ago
• morisUtokyo / uTR

  View on GitHub
  Detect key Units in mosaic Tandem Repeats from representative reads from the same locus
  ☆11Aug 2, 2023Updated 2 years ago
• luukromeijn / lncRNA-Py

  View on GitHub
  lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…
  ☆12Jan 24, 2025Updated last year
• HimanshuLab / SCI-VCF

  View on GitHub
  ☆11Oct 11, 2024Updated last year
• juansearch / callMom

  View on GitHub
  Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.
  ☆10Apr 19, 2016Updated 9 years ago
• formbio / laava

  View on GitHub
  LAAVA: Long-read AAV Analysis
  ☆13Dec 9, 2025Updated 2 months ago
• Scout24 / succubus

  View on GitHub
  Lightweight Python module for daemonizing
  ☆10Jan 25, 2022Updated 4 years ago
• kieranrcampbell / pseudogp

  View on GitHub
  Probabilistic pseudotime for single-cell RNA-seq data
  ☆10Oct 6, 2017Updated 8 years ago
• benoitc / flower

  View on GitHub
  collection of modules to build distributed and reliable concurrent systems in Python.
  ☆206Sep 14, 2013Updated 12 years ago
• fedarko / strainFlye

  View on GitHub
  Pipeline for analyzing rare mutations in metagenome-assembled genomes
  ☆10Apr 4, 2025Updated 10 months ago
• PacificBiosciences / pb-StarPhase

  View on GitHub
  A phase-aware pharmacogenomic diplotyper for PacBio datasets
  ☆20Dec 9, 2025Updated 2 months ago