qinghezeng / Histo2GeneSignaturesLinks
Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images
☆20Updated last year
Alternatives and similar repositories for Histo2GeneSignatures
Users that are interested in Histo2GeneSignatures are comparing it to the libraries listed below
Sorting:
- Tools to build deep learning pipelines.☆112Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆85Updated last year
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆77Updated 10 months ago
- Solid Tumor Associative Modeling in Pathology☆102Updated this week
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated 3 weeks ago
- First commit☆64Updated 3 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆25Updated 3 months ago
- List of pathology feature extractors and foundation models☆159Updated 5 months ago
- ☆57Updated 3 years ago
- ☆28Updated last year
- Histopathology Image Analysis☆93Updated 2 years ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆103Updated 9 months ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆32Updated last year
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆43Updated 6 months ago
- GrandQC tool for tissue detection and quality control in pathology☆75Updated 9 months ago
- ☆57Updated 2 years ago
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆116Updated 4 months ago
- ☆37Updated 8 months ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆29Updated last year
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆230Updated 2 years ago
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆45Updated 5 years ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆52Updated last year
- ☆20Updated 2 years ago
- Awesome List of Digital and Computational Pathology Resources☆94Updated 10 months ago
- Standardized benchmark for computational pathology foundation models.☆119Updated 3 weeks ago
- Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch☆24Updated 2 years ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆30Updated 5 years ago
- Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.☆44Updated 11 months ago
- Code from Foersch et al. (Under Construction / Development)☆37Updated 2 years ago
- Histopathology Slides Preprocessing Pipeline☆42Updated this week