Alternatives and similar repositories for SurfDock

Users that are interested in SurfDock are comparing it to the libraries listed below

• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆238Updated 6 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆173Updated 4 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆165Updated 2 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆224Updated 6 months ago
• ikalvet / heme_binder_diffusion
  ☆146Updated 6 months ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆207Updated 9 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆155Updated 2 years ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆175Updated 4 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆261Updated last month
• guyujun / pyrosetta-basic
  ☆181Updated 4 years ago
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆282Updated last month
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆151Updated 9 months ago
• jertubiana / ScanNet
  ☆138Updated 7 months ago
• tencent-ailab / Interformer
  ☆114Updated 6 months ago
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆182Updated 2 weeks ago
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆221Updated this week
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆142Updated 10 months ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆222Updated 3 months ago
• yehlincho / BoltzDesign1
  ☆236Updated last week
• The-Institute-for-AI-Molecular-Design / ODesign
  Official repository of "ODesign: A World Model for Biomolecular Interaction Design"
  ☆241Updated last week
• Kortemme-Lab / flex_ddG_tutorial
  ☆141Updated 3 years ago
• ChatMol / ChatMol
  ChatMol
  ☆243Updated 2 months ago
• KyGao / awesome-docking
  An awesome & curated list of docking papers
  ☆125Updated last month
• Valdes-Tresanco-MS / AutoDockTools_py3
  Python3 translation of AutoDockTools
  ☆132Updated last year
• levinthal / Pallatom
  ☆133Updated 8 months ago
• westlake-repl / SaprotHub
  Making Protein Language Modeling Accessible to All Biologists
  ☆148Updated this week
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆117Updated last year
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆121Updated 10 months ago
• BioinfoMachineLearning / PoseBench
  Comprehensive benchmarking of protein-ligand structure prediction methods. (Nature Machine Intelligence)
  ☆205Updated last month
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆179Updated 2 months ago