Alternatives and similar repositories for iGemMarburg2019

Users that are interested in iGemMarburg2019 are comparing it to the libraries listed below

• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆206Updated this week
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆104Updated 2 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆131Updated 2 months ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆62Updated 5 months ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆286Updated 3 months ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆113Updated 3 weeks ago
• manulera / OpenCloning
  An Open-Source web application to plan and document cloning and genome engineering
  ☆36Updated this week
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆364Updated 2 months ago
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 5 years ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆113Updated this week
• EddyRivasLab / hmmer
  HMMER: biological sequence analysis using profile HMMs
  ☆382Updated 2 weeks ago
• TeselaGen / tg-oss
  Teselagen Open Source modules
  ☆76Updated this week
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆251Updated last month
• pinellolab / CRISPResso2
  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
  ☆319Updated this week
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆271Updated 4 months ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆203Updated 2 months ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆203Updated 4 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆78Updated 3 weeks ago
• tyhho / OT-2_3D_Designs
  3D Designs to be used with OT-2
  ☆17Updated 4 years ago
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆298Updated last year
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆54Updated 7 months ago
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 3 years ago
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆182Updated 3 weeks ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆142Updated last month
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• Edinburgh-Genome-Foundry / DnaChisel
  A versatile DNA sequence optimizer
  ☆246Updated 5 months ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 5 months ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆71Updated 10 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆86Updated this week