A collection of R scripts covering the entire analysis workflow for single-cell RNA sequencing (scRNA-seq).
☆34May 26, 2026Updated last month
Alternatives and similar repositories for scRNA_seq_Analysis
Users that are interested in scRNA_seq_Analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell Colorectal Cancer Atlas with 4.27M cells☆20Aug 7, 2025Updated 11 months ago
- 📄文档:医学和生信笔记公众号“生信数据挖掘”合集☆65Nov 29, 2023Updated 2 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆15Jun 24, 2025Updated last year
- ☆14Mar 2, 2020Updated 6 years ago
- ☆13Jul 8, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 《学个毛生信》源代码☆16May 8, 2026Updated 2 months ago
- Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy☆13Apr 2, 2018Updated 8 years ago
- ☆28May 27, 2026Updated last month
- TrGP aims to get knowledge from the source task's learning system to improve the target genomic prediction (GP) task.☆15Dec 12, 2023Updated 2 years ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jan 23, 2026Updated 5 months ago
- phylo2vec: a library for vector-based phylogenetic tree manipulation☆21Jul 9, 2026Updated last week
- Python package for Genome-Wide Association Studies (GWAS). Implements GLM, MLM, FarmCPU, and BLINK with support for VCF, PLINK, HapMap, a…☆15Jul 9, 2026Updated last week
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆272Jul 10, 2026Updated last week
- ☆31Jun 29, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Space-Time Point Pattern Simulation, Visualisation and Analysis☆11Jul 19, 2024Updated 2 years ago
- A terminal UI for monitoring Snakemake workflows☆23Jun 24, 2026Updated 3 weeks ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 6 years ago
- Joinpoint Regression method for Population Dynamics Lab☆31Sep 28, 2022Updated 3 years ago
- Code for "Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment tri…☆22Jul 23, 2024Updated last year
- ☆26Updated this week
- A lightweight, privacy-first, single-HTML tool for tracking academic paper submissions and peer reviews. 一款纯前端、数据存本地的极简学术投稿与审稿管理工具。☆24Apr 5, 2026Updated 3 months ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Aug 10, 2022Updated 3 years ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆24Apr 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Polyploid-aware, multiscale super-pangenome graph strategy☆21Oct 29, 2025Updated 8 months ago
- Fast population genetics clustering.☆32Jul 10, 2026Updated last week
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆25May 23, 2026Updated last month
- Lightweight, self-hosted PDF paper manager with figure extraction, grouping, and tagging. Built with Go + SQLite☆41May 22, 2026Updated last month
- A PyTorch Implementation of ViT (Vision Transformer)☆17Jul 12, 2021Updated 5 years ago
- Standard terms for annotating mammalian phenotypic data☆20Updated this week
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- Machine learning-based integration model with elegant performance☆206Sep 23, 2025Updated 9 months ago
- ☆21Jul 20, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Glaze is langchain for images. If you're building a text-to-image app with LLMs (Stable Diffusion v2.1/v1.5, ControlNet) or an image-to-t…☆26Apr 1, 2023Updated 3 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26Jun 24, 2026Updated 3 weeks ago
- ☆18Jan 12, 2022Updated 4 years ago
- ☆21Dec 8, 2022Updated 3 years ago
- Code and data for Cell-o1.☆28Updated this week
- ☆29Apr 26, 2024Updated 2 years ago