hartwigmedical / pipeline
Pipeline of tools to process raw fastq data and produce meaningful genomic data
☆14Updated 4 years ago
Related projects: ⓘ
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 2 years ago
- The command-line interface to GGD☆42Updated last year
- ☆10Updated this week
- Manuscript describing ChronQC is now available online in Bioinformatics☆17Updated 5 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- GenoTypes Compressor☆15Updated 2 years ago
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆14Updated last year
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- ☆33Updated 3 years ago
- ☆22Updated this week
- GWAS and rare variants tests at high speed using regenie☆10Updated 3 months ago
- Lightweight workflows in bioinformatics:☆23Updated 9 years ago
- Basic, no assumptions, multi-pileup☆24Updated 10 years ago
- Easily run WDL workflows on GCP☆13Updated 2 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Gene lists related to cancer immunotherapy☆13Updated last week
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆21Updated 6 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- cache packages permanently☆12Updated 2 months ago
- Novel Adjacency Identification with Barcoded Reads☆14Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆21Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 2 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Gordon's Text utils Library☆10Updated 2 years ago
- R tools to interact with hap.py output☆15Updated 5 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆44Updated 5 years ago