typedb-osi / typedb-bio
TypeDB Bio: Biomedical Knowledge Graph
โ81Updated 7 months ago
Alternatives and similar repositories for typedb-bio:
Users that are interested in typedb-bio are comparing it to the libraries listed below
- KGX is a Python library for exchanging Knowledge Graphsโ117Updated last month
- BioGrakn Knowledge Graphโ182Updated 4 years ago
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ62Updated this week
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Modelsโ180Updated 9 months ago
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.โ80Updated last year
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ51Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ33Updated this week
- python library for working with ontologies and ontology associationsโ124Updated this week
- โ128Updated 2 years ago
- Schema and generated objects for biolink data model and upper ontologyโ183Updated 2 weeks ago
- mOWL: Machine Learning library with Ontologiesโ63Updated 2 weeks ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giโฆโ45Updated 2 years ago
- Ontology Access Kit: A python library and command line application for working with ontologiesโ131Updated this week
- Data transformation framework for LinkML data modelsโ48Updated last month
- NetworkX-based Python library for representing ontologiesโ84Updated last year
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)โ40Updated this week
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ120Updated this week
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their ownโฆโ16Updated 2 weeks ago
- a module to calculate the MeSH similarityโ25Updated 3 years ago
- Hetnets in Python (relocated from dhimmel/hetio)โ94Updated last year
- Ontology Tutorialโ69Updated 2 years ago
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ42Updated last year
- A Knowledge Graph for Relational Learning On Biological Dataโ90Updated 10 months ago
- Integrated OBO ontology storeโ44Updated 3 months ago
- OBO Organized Knowledge: Training materials for becoming an OBO engineerโ105Updated last week
- Toolkit for constructing, analyzing, and visualizing data-driven ontologiesโ18Updated 5 years ago
- The Ontology for Biomedical Investigationsโ76Updated this week
- RO is an ontology of relations for use with biological ontologiesโ94Updated this week
- The symptom ontology was designed around the guiding concept of a symptom being: โA perceived change in function, sensation or appearanceโฆโ38Updated 8 months ago
- Monarch Initiative website and APIโ20Updated this week