genepattern / genepattern-pythonLinks
GenePattern Python Library
☆11Updated last year
Alternatives and similar repositories for genepattern-python
Users that are interested in genepattern-python are comparing it to the libraries listed below
Sorting:
- The GenePattern Server web application☆36Updated last month
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last week
- Profiling of transcription factor binding sites in cell-free DNA☆25Updated 5 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…☆74Updated last year
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆82Updated 5 years ago
- Utilities for building and managing bioconda recipes☆102Updated this week
- ☆17Updated 4 months ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆150Updated 2 weeks ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆130Updated last year
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26Updated 5 years ago
- Bioinformatics tools for Python☆25Updated 6 months ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆111Updated last year
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 10 months ago
- DNA sequencing analysis notes from Ming Tang☆143Updated 2 years ago
- Synthego ICE - Inference of CRISPR Editing software☆68Updated last year
- Transcript quantification import for modular pipelines☆137Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆42Updated 6 months ago
- An attempt to help anyone interested in using Perl for Bioinformatics☆34Updated 5 years ago
- A curated collection of free resources to help the aspiring computational biologist learn about the R programming language.☆23Updated 7 months ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆35Updated 2 years ago
- ☆35Updated 6 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…☆27Updated last year
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆111Updated 6 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated this week
- RNA-Seq Mutation Detection☆28Updated 3 years ago
- small RNA analysis from NGS data☆37Updated 9 months ago