Alternatives and similar repositories for genepattern-python:

Users that are interested in genepattern-python are comparing it to the libraries listed below

• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆81Updated last week
• Edinburgh-Genome-Foundry / Primavera
  Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
  ☆33Updated 2 years ago
• daler / metaseq
  Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
  ☆87Updated 4 years ago
• kn-bibs / dotplot
  Simple visualisation tool for sequences' similarity in bioinformatics
  ☆13Updated 6 years ago
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆144Updated this week
• mpg-age-bioinformatics / AGEpy
  Bioinformatics tools for Python
  ☆24Updated 2 months ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆52Updated 2 years ago
• gear-genomics / tracy
  Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
  ☆107Updated 3 months ago
• neuroeddu / Auto-qPCR
  A program to automatically process qPCR data from csv files in any PCR machine. To create a normalized table of RNA/DNA quantities, stati…
  ☆44Updated 2 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 6 months ago
• genepattern / genepattern-server
  The GenePattern Server web application
  ☆36Updated this week
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆109Updated 2 months ago
• bioinformatics-core-shared-training / Bulk_RNAseq_Course_Base
  ☆15Updated this week
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆85Updated 6 years ago
• synthego-open / ice
  Synthego ICE - Inference of CRISPR Editing software
  ☆67Updated 11 months ago
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆62Updated 8 years ago
• Ensembl / ensembl-analysis
  Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
  ☆18Updated this week
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated last week
• timbitz / Whippet.jl
  Lightweight and Fast; RNA-seq quantification at the event-level
  ☆109Updated last year
• yarden / MISO
  MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
  ☆132Updated 2 years ago
• bioinformaticsdotca / bioinformaticsdotca.github.io
  Repo for student website
  ☆24Updated this week
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆40Updated 3 months ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆99Updated 3 weeks ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• brentp / cruzdb
  python access to UCSC genomes database
  ☆135Updated 4 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆49Updated 5 years ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆79Updated 11 months ago
• BD2KGenomics / protect
  ☆28Updated 3 years ago
• getzlab / rnaseqc
  Fast, efficient RNA-Seq metrics for quality control and process optimization
  ☆156Updated 3 months ago
• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆150Updated 2 years ago