BoHuangLab / Protein-Localization-Transformer
Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction
☆29Updated last year
Alternatives and similar repositories for Protein-Localization-Transformer:
Users that are interested in Protein-Localization-Transformer are comparing it to the libraries listed below
- PHP + My SQL☆22Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆96Updated 2 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆84Updated 2 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 2 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆112Updated 3 years ago
- ☆34Updated last week
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆62Updated 3 months ago
- ☆38Updated 6 months ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆73Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆128Updated 10 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated 11 months ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆24Updated last week
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 3 years ago
- ☆117Updated 9 months ago
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆52Updated last year
- Open source code for AlphaFold to extract protein embeddings☆26Updated 3 years ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 2 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆82Updated last week
- a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)☆89Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆94Updated 2 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆63Updated last year
- ☆131Updated 2 years ago
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆58Updated 5 months ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆81Updated 3 years ago
- Primary RNA sequence model☆37Updated 11 months ago