BoHuangLab / Protein-Localization-Transformer
Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction
☆28Updated last year
Alternatives and similar repositories for Protein-Localization-Transformer:
Users that are interested in Protein-Localization-Transformer are comparing it to the libraries listed below
- PHP + My SQL☆22Updated last year
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆96Updated 2 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 2 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆82Updated 2 years ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆72Updated last year
- Multimodal encoder-only transformer model for image-based protein predictions☆15Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆70Updated 3 weeks ago
- Repository for mRNA Paper and CodonBERT publication.☆118Updated 7 months ago
- ☆34Updated 3 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆52Updated last week
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆57Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 9 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆59Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆36Updated 8 months ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆110Updated 3 years ago
- ☆112Updated 5 months ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆23Updated last month
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆17Updated 3 years ago
- Biological Network Integration using Convolutions☆60Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆64Updated 2 years ago
- Primary RNA sequence model☆32Updated 8 months ago
- Generative Language Modeling for Antibody Design☆135Updated 3 months ago
- Open source code for AlphaFold to extract protein embeddings☆26Updated 3 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆87Updated 2 years ago
- ☆33Updated 3 years ago
- ☆29Updated last year
- ☆19Updated last year
- MSA Transformer reproduction code☆72Updated 3 years ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆143Updated last year