ttung / nbencdecLinks
Tool to encode/decode .ipynb into .py files.
☆17Updated 4 years ago
Alternatives and similar repositories for nbencdec
Users that are interested in nbencdec are comparing it to the libraries listed below
Sorting:
- friendly command-line tool for initializing python packages☆18Updated 5 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 9 years ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- permutation tests and confidence sets☆58Updated last year
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated last year
- Deploy Dask on DRMAA clusters☆40Updated 4 years ago
- Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)☆12Updated 5 years ago
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 8 years ago
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 6 years ago
- ☆32Updated 2 years ago
- Legacy project superseded by https://github.com/morphonets/SNT☆12Updated 3 years ago
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆21Updated 9 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 5 years ago
- Software for exploration of gene expression data from single-cell RNA sequencing.☆28Updated 6 years ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 2 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆82Updated 4 years ago
- Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing☆24Updated 10 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated this week
- ☆12Updated 9 months ago
- ☆20Updated 12 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- Spatial Transcriptomics Dashboard☆27Updated last year
- A library to simulate single-cell data☆2Updated 2 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Updated 5 years ago
- ☆14Updated this week