ttung / nbencdec

Related projects: ⓘ

• roryk / ipython-cluster-helper
  Tool to easily start up an IPython cluster on different schedulers.
  ☆148Updated 4 years ago
• freeman-lab / spark-janelia
  scripts for using spark on janelia's cluster
  ☆13Updated 10 months ago
• IDR / idr-notebooks
  Jupyter Notebooks for the Image Data Resource
  ☆18Updated last year
• freeman-lab / pim
  friendly command-line tool for initializing python packages
  ☆18Updated 4 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆16Updated last year
• CoBrALab / qbatch
  ☆27Updated last year
• statlab / permute
  permutation tests and confidence sets
  ☆56Updated 5 months ago
• dask / dask-drmaa
  Deploy Dask on DRMAA clusters
  ☆40Updated 3 years ago
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆109Updated 5 years ago
• schlegelp / bioRxiv-LaTeX-template
  LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org
  ☆20Updated 8 years ago
• kristinbranson / BABAM
  The Browsable Atlas of Behavior-Anatomy Maps (BABAM) is a GUI for exploring hypotheses of correlations between neural activity in regions…
  ☆11Updated last year
• themantalope / pydendroheatmap
  A tool for generating heatmaps from hierarchically clustered data.
  ☆40Updated 6 years ago
• bgruening / docker-galaxy-imaging
  Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)
  ☆12Updated 5 years ago
• adrianveres / polo
  Python Optimal Leaf Ordering for Hierarchical Clustering
  ☆21Updated 7 years ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 2 years ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆29Updated 2 years ago
• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆29Updated 4 years ago
• sebi06 / BioFormatsRead
  This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but sho…
  ☆12Updated 3 years ago
• BICCN / cell-locator
  manually align specimens to annotated 3D spaces
  ☆19Updated last year
• chanzuckerberg / ExpressionMatrix2
  Software for exploration of gene expression data from single-cell RNA sequencing.
  ☆28Updated 5 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆26Updated last week
• BMCV / galaxy-image-analysis
  Galaxy tools for image analysis
  ☆14Updated last month
• ome / omero-documentation
  Sphinx-based documentation for the Open Microscopy Environment
  ☆22Updated this week
• theandygross / TCGA
  ☆36Updated 7 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated last month
• fiji / SNT
  Legacy project superseded by https://github.com/morphonets/SNT
  ☆11Updated 3 years ago
• cjprybol / reproducibility-via-singularity
  A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
  ☆26Updated 7 years ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated last year
• ome / ome-model
  OME model (specification, code generator, implementation)
  ☆13Updated 3 months ago
• ome / omero-ms-zarr
  Experimental micro-service for implementing the Zarr spec over HTTP
  ☆17Updated last month