Make and use nested directory trees corresponding to combinatorial choices of parameters
☆20Apr 23, 2017Updated 9 years ago
Alternatives and similar repositories for nestly
Users that are interested in nestly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extends the scons build tool for reproducible workflows in bioinformatics.☆16Apr 16, 2026Updated 3 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 27, 2026Updated last month
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Jul 23, 2013Updated 12 years ago
- Moderator Templates for https://www.biostars.org/☆11Apr 15, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Phylogenetic placement and downstream analysis☆95Jan 28, 2026Updated 5 months ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Sep 7, 2018Updated 7 years ago
- ☆10Dec 12, 2017Updated 8 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- ☆11Jun 23, 2017Updated 9 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Phylogenetic plots for R and ggplot☆27Oct 3, 2012Updated 13 years ago
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 9 months ago
- Log command line events to a graph database :)☆13Mar 12, 2016Updated 10 years ago
- my PhD thesis☆36Jul 10, 2019Updated 7 years ago
- My emacs configuration☆17Nov 20, 2019Updated 6 years ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆24Jul 5, 2026Updated 2 weeks ago
- A set of mapping and color palette functions☆24Jan 9, 2020Updated 6 years ago
- A small collection of useful tutorials and links☆15Apr 13, 2024Updated 2 years ago
- A graph aligner☆31Sep 17, 2024Updated last year
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An application to compare genetic maps with D3 & Shiny☆22Feb 28, 2023Updated 3 years ago
- ☆15May 21, 2026Updated 2 months ago
- ☆19Nov 8, 2022Updated 3 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- Bio++ Core Library☆12Jul 7, 2026Updated 2 weeks ago
- DNA, Amino Acid and RNA Tests☆33Jun 13, 2020Updated 6 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 8 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A probabilistic framework in PyTorch for phylogenetic models☆20Apr 24, 2026Updated 2 months ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆70Oct 29, 2020Updated 5 years ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- Biological Graphic tool in Python☆34May 14, 2020Updated 6 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jun 16, 2026Updated last month
- Multi-bus clients for macOS and Linux, and bus-host board firmware for the RP2040.☆19Updated this week
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago