CDCgov / wastewater-informed-covid-forecasting
Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
☆44Updated this week
Related projects ⓘ
Alternatives and complementary repositories for wastewater-informed-covid-forecasting
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆16Updated this week
- ☆17Updated 3 weeks ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆17Updated last week
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆57Updated last week
- ☆36Updated 2 weeks ago
- R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters☆33Updated 3 weeks ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated this week
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆115Updated this week
- Extract raw underlying data from PDF figures☆56Updated 9 months ago
- The repository for the English version of the Epidemiologist R Handbook☆99Updated 3 weeks ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- R package for real-time Rt estimation with penalized splines☆13Updated this week
- ☆27Updated this week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- ☆10Updated this week
- Disease outbreak reconstruction from epidemiological and genetic data☆31Updated last month
- Inference framework for serological data☆16Updated this week
- Ggplot picture previewer☆160Updated last month
- ☆36Updated 3 years ago
- ☆13Updated 8 months ago
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆10Updated last year
- Pathogen evolution, selection and immunity☆47Updated 8 months ago
- ☆40Updated 4 months ago
- ☆14Updated last year
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago
- Class materials for BIOST 509☆60Updated 4 years ago
- Four-in-one value pack of host-virus association data☆22Updated 2 years ago
- Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975☆15Updated 4 years ago