CDCgov / wastewater-informed-covid-forecastingLinks
Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
☆48Updated last week
Alternatives and similar repositories for wastewater-informed-covid-forecasting
Users that are interested in wastewater-informed-covid-forecasting are comparing it to the libraries listed below
Sorting:
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆23Updated 5 months ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated this week
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆17Updated this week
- ☆41Updated 3 weeks ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆36Updated last week
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- ☆41Updated last week
- ☆19Updated last month
- Flu Scenario Modeling Hub☆12Updated last month
- Data repository for NWSS☆11Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆129Updated last week
- R package for real-time Rt estimation with penalized splines☆14Updated last week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated 5 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Disease outbreak reconstruction from epidemiological and genetic data☆32Updated 8 months ago
- Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew☆11Updated this week
- ☆14Updated last year
- Inference framework for serological data☆18Updated 2 weeks ago
- ☆40Updated 10 months ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Extract raw underlying data from PDF figures☆55Updated last year
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- The repository for the English version of the Epidemiologist R Handbook☆116Updated 4 months ago
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- ☆11Updated this week
- ☆11Updated 2 weeks ago
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- ☆29Updated 2 months ago
- epidemia package☆48Updated 2 years ago