CDCgov / wastewater-informed-covid-forecasting
Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
☆44Updated this week
Related projects ⓘ
Alternatives and complementary repositories for wastewater-informed-covid-forecasting
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆16Updated this week
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆16Updated this week
- ☆36Updated last week
- ☆17Updated 2 weeks ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆57Updated last week
- R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters☆33Updated 2 weeks ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- ☆27Updated last week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- ☆13Updated last year
- R package for real-time Rt estimation with penalized splines☆13Updated this week
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated this week
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆114Updated this week
- Inference framework for serological data☆16Updated 2 months ago
- Extract raw underlying data from PDF figures☆56Updated 9 months ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- The repository for the English version of the Epidemiologist R Handbook☆97Updated last week
- ☆10Updated this week
- R package for deriving social mixing matrices from survey data.☆38Updated 3 weeks ago
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- Tools for basic signal processing in epidemiology☆13Updated this week
- SEIR transmission model of COVID-19. Documentation at:☆50Updated 8 months ago
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆10Updated last year
- Disease outbreak reconstruction from epidemiological and genetic data☆31Updated last month
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated last year
- ☆40Updated 4 months ago
- R Package for individual based epidemiological models☆30Updated 2 months ago
- ☆27Updated last month
- SEIR+ model☆20Updated 2 months ago
- Course on nowcasting and forecasting of infectious disease dynamcis☆11Updated this week