Alternatives and similar repositories for wastewater-informed-covid-forecasting

Users that are interested in wastewater-informed-covid-forecasting are comparing it to the libraries listed below

• CDCgov / ww-inference-model
  An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …
  ☆27Updated last month
• epinowcast / epinowcast
  A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…
  ☆62Updated 2 weeks ago
• ChrisHIV / teaching
  ☆19Updated 2 months ago
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆23Updated this week
• epiverse-trace / epiparameter
  R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…
  ☆35Updated 3 weeks ago
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆43Updated 4 months ago
• reichlab / variant-nowcast-hub
  A repository to store COVID-19 variant nowcasts collected as a modeling hub.
  ☆19Updated this week
• epiforecasts / EpiNow2
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆132Updated last week
• thibautjombart / OutbreakTools
  Basic Tools for the Analysis of Disease Outbreaks
  ☆12Updated 6 years ago
• kidusasfaw / spatPomp
  R package for statistical inference of spatiotemporal partially observed Markov processes
  ☆11Updated last year
• mrc-ide / reactidd
  This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…
  ☆17Updated last year
• reconhub / outbreaker2
  Disease outbreak reconstruction from epidemiological and genetic data
  ☆35Updated last week
• adamkucharski / scrapR
  Extract raw underlying data from PDF figures
  ☆55Updated last year
• cdcepi / FluSight-forecast-hub
  ☆47Updated this week
• CDCgov / cfa-gam-rt
  R package for real-time Rt estimation with penalized splines
  ☆14Updated 2 weeks ago
• mine-cetinkaya-rundel / indo-rct
  ☆15Updated last year
• mrc-ide / EpiEstim
  A tool to estimate time varying instantaneous reproduction number during epidemics
  ☆101Updated last week
• blab / evofr
  Tools for evolutionary forecasting
  ☆14Updated 3 months ago
• crsl4 / mindful-programming
  Computing resources for peace of mind
  ☆13Updated 2 years ago
• mac-theobio / McMasterPandemic
  SEIR+ model
  ☆19Updated 5 months ago
• vnminin / SISMID_MCMC_I
  Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)
  ☆24Updated 4 years ago
• CDCgov / ixa
  ☆19Updated this week
• appliedepi / epiRhandbook_eng
  The repository for the English version of the Epidemiologist R Handbook
  ☆133Updated 11 months ago
• WHO-Collaboratory / collaboratory-epipipeline-community
  ☆14Updated 2 years ago
• ekenah / TranStat
  An R package for the analysis of infectious disease transmission data
  ☆10Updated 4 years ago
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆42Updated last week
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• PLN-team / PLNmodels
  A collection of Poisson lognormal models for multivariate count data analysis
  ☆58Updated last month
• ArtPoon / ggfree
  ggplot2-style plots with base R graphics
  ☆70Updated 3 months ago
• CDCgov / pyrenew-hew
  Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.
  ☆16Updated this week