CDCgov / ww-inference-modelLinks
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
☆27Updated last month
Alternatives and similar repositories for ww-inference-model
Users that are interested in ww-inference-model are comparing it to the libraries listed below
Sorting:
- Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.☆16Updated this week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆49Updated this week
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- ☆12Updated last week
- R package for real-time Rt estimation with penalized splines☆14Updated last week
- ☆19Updated this week
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆62Updated last week
- ☆10Updated 2 weeks ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆19Updated last week
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆35Updated 3 weeks ago
- ☆11Updated last week
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆132Updated last week
- Course on nowcasting and forecasting of infectious disease dynamics☆22Updated last week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆16Updated last year
- Tools for basic signal processing in epidemiology☆12Updated last week
- Estimate epidemiological delay distributions with brms☆15Updated last week
- Uses Stan sampler and math library to semiparametrically fit linear and multilevel models with additive Bayesian Additive Regression Tree…☆47Updated 3 weeks ago
- Create Contact Matrices from Population Data☆20Updated last week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 2 years ago
- ☆43Updated 4 months ago
- Utilities for Scoring and Assessing Predictions☆60Updated last week
- R-package for building and fitting Bayesian ODE models in Stan☆29Updated last year
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Updated 4 years ago
- Data and statistical models for biomarker shedding.☆15Updated 3 weeks ago
- ☆47Updated this week
- Code to test Rt estimates against synthetic data☆18Updated 5 years ago
- Run Stan models in the browser☆54Updated last week
- Computing resources for peace of mind☆13Updated 2 years ago
- statistical models to analyze diagnostic tests☆16Updated 5 years ago