CDCgov / ww-inference-modelLinks
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
☆25Updated 7 months ago
Alternatives and similar repositories for ww-inference-model
Users that are interested in ww-inference-model are comparing it to the libraries listed below
Sorting:
- Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew☆12Updated last week
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆49Updated this week
- R package for real-time Rt estimation with penalized splines☆14Updated this week
- ☆12Updated this week
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆62Updated last week
- ☆19Updated last week
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆18Updated this week
- ☆10Updated last week
- ☆41Updated this week
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆37Updated 2 weeks ago
- Estimate epidemiological delay distributions with brms☆15Updated last week
- Course on nowcasting and forecasting of infectious disease dynamics☆21Updated 2 weeks ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- ☆11Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆15Updated 9 months ago
- Create Contact Matrices from Population Data☆20Updated 2 weeks ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- ☆30Updated last month
- ☆10Updated 10 months ago
- Computing resources for peace of mind☆13Updated 2 years ago
- Utilities for Scoring and Assessing Predictions☆55Updated this week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Tools for basic signal processing in epidemiology☆13Updated 2 weeks ago
- SEIR+ model☆19Updated last month
- ☆19Updated 3 weeks ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆131Updated last week
- Run Stan models in the browser☆47Updated 2 weeks ago
- Materials for the course on Bayesian model building run at Second Faculty of Medicine at Charles University in Prague☆11Updated last year
- epidemia package☆48Updated 3 years ago