An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
☆30Jul 13, 2026Updated last week
Alternatives and similar repositories for ww-inference-model
Users that are interested in ww-inference-model are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Feb 9, 2026Updated 5 months ago
- ☆13Jul 13, 2026Updated last week
- R package for real-time Rt estimation with penalized splines☆16Jan 12, 2026Updated 6 months ago
- Models and infrastructure for routine forecasting of respiratory disease burden☆16Updated this week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆51Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆27Updated this week
- Estimate epidemiological delay distributions with brms☆16Jun 22, 2026Updated last month
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆21Updated this week
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆66Jul 11, 2026Updated last week
- Variant forecasting demo☆11Updated this week
- US RSV Forecast Hub☆12Jun 5, 2026Updated last month
- Tools for building predictive models in epidemiology.☆17Updated this week
- Easily combine predictions from multiple Bayesian models using techniques including (pseudo) Bayesian model averaging, hierarchical stack…☆36Dec 19, 2025Updated 7 months ago
- The Flexible Epidemic Modeling Pipeline☆12Dec 15, 2025Updated 7 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆34Updated this week
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆15Feb 19, 2025Updated last year
- Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.☆29Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆17Oct 31, 2024Updated last year
- Utilities for Scoring and Assessing Predictions☆63Updated this week
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆140Updated this week
- Tools for constructing and plotting Markov Random Fields in R for graphical data☆24May 14, 2026Updated 2 months ago
- Tools for basic signal processing in epidemiology☆12Updated this week
- Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.☆12Jul 16, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆16Aug 18, 2021Updated 4 years ago
- ☆24Feb 2, 2026Updated 5 months ago
- Data and statistical models for biomarker shedding.☆17Updated this week
- Metagenomics calibration R package☆20Feb 15, 2022Updated 4 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆24Jul 14, 2026Updated last week
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆11Oct 30, 2023Updated 2 years ago
- This repository contains python implementations of scoring rules for forecasts provided in a prediction interval format.☆11Jul 31, 2020Updated 5 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Monte-Carlo State Space Models☆19Jul 1, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Sep 30, 2025Updated 9 months ago
- Analysing epidemic trends using AutoML approaches.☆20Apr 23, 2021Updated 5 years ago
- A {crew} launcher plugin for AWS Batch☆20Jan 5, 2026Updated 6 months ago
- Iterate multiple realisations of stochastic models☆20Aug 15, 2025Updated 11 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Aug 14, 2025Updated 11 months ago
- Code to test Rt estimates against synthetic data☆18Nov 30, 2020Updated 5 years ago
- Epidemiological surveillance in Python☆11Mar 20, 2024Updated 2 years ago