CDCgov / ww-inference-model
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
☆23Updated 4 months ago
Alternatives and similar repositories for ww-inference-model
Users that are interested in ww-inference-model are comparing it to the libraries listed below
Sorting:
- Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew☆11Updated last week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆48Updated this week
- R package for real-time Rt estimation with penalized splines☆14Updated 2 months ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆16Updated this week
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆21Updated this week
- ☆11Updated this week
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆35Updated 3 weeks ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated last week
- ☆14Updated last week
- Estimate epidemiological delay distributions with brms☆15Updated last week
- ☆11Updated last week
- ☆41Updated last week
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- ☆29Updated last month
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆13Updated 6 months ago
- Course on nowcasting and forecasting of infectious disease dynamcis☆16Updated last week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- ☆14Updated last year
- Create Contact Matrices from Population Data☆20Updated last week
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated 4 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- ☆19Updated 3 weeks ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.☆16Updated last week
- ☆10Updated 7 months ago
- Tools for basic signal processing in epidemiology☆14Updated 3 weeks ago
- ☆39Updated this week
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆20Updated last week
- Extract raw underlying data from PDF figures☆55Updated last year