CDCgov / ww-inference-modelLinks
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
☆27Updated last month
Alternatives and similar repositories for ww-inference-model
Users that are interested in ww-inference-model are comparing it to the libraries listed below
Sorting:
- Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.☆16Updated this week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆50Updated this week
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated last week
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆63Updated last week
- R package for real-time Rt estimation with penalized splines☆15Updated 3 weeks ago
- ☆13Updated this week
- ☆20Updated this week
- ☆10Updated last month
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆36Updated last week
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆20Updated this week
- Course on nowcasting and forecasting of infectious disease dynamics☆23Updated 3 weeks ago
- Tools for basic signal processing in epidemiology☆12Updated last week
- ☆43Updated 5 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆133Updated this week
- Estimate epidemiological delay distributions with brms☆15Updated 3 weeks ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- ☆11Updated 3 weeks ago
- Utilities for Scoring and Assessing Predictions☆60Updated last week
- Create Contact Matrices from Population Data☆20Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆17Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 2 years ago
- Monitor MCMC runs in the browser☆37Updated 2 years ago
- ☆52Updated last week
- Run Stan models in the browser☆54Updated 2 weeks ago
- R-package for building and fitting Bayesian ODE models in Stan☆29Updated last year
- statistical models to analyze diagnostic tests☆16Updated 5 years ago
- Code to test Rt estimates against synthetic data☆18Updated 5 years ago
- Materials for the course on Bayesian model building run at Second Faculty of Medicine at Charles University in Prague☆11Updated last year
- ☆32Updated 3 weeks ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Updated 5 years ago