CDCgov / ww-inference-modelLinks
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
☆24Updated 6 months ago
Alternatives and similar repositories for ww-inference-model
Users that are interested in ww-inference-model are comparing it to the libraries listed below
Sorting:
- Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew☆12Updated last week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆50Updated this week
- R package for real-time Rt estimation with penalized splines☆14Updated 3 weeks ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- ☆12Updated this week
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated last week
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆17Updated this week
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆35Updated 2 weeks ago
- Course on nowcasting and forecasting of infectious disease dynamics☆19Updated last week
- ☆11Updated this week
- ☆41Updated last month
- Estimate epidemiological delay distributions with brms☆15Updated 2 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆14Updated 8 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- ☆16Updated last week
- ☆10Updated 9 months ago
- ☆30Updated this week
- Tools for basic signal processing in epidemiology☆14Updated this week
- Create Contact Matrices from Population Data☆20Updated 2 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆131Updated this week
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆11Updated last year
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- ☆19Updated 2 months ago
- ☆14Updated last year
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- ☆42Updated this week
- Utilities for Scoring and Assessing Predictions☆53Updated last week
- epidemia package☆48Updated 3 years ago