Alternatives and similar repositories for covid-rt-estimates

Users that are interested in covid-rt-estimates are comparing it to the libraries listed below

• epiforecasts / covidregionaldata
  An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…
  ☆37Updated 2 years ago
• mrc-ide / EpiEstim
  A tool to estimate time varying instantaneous reproduction number during epidemics
  ☆100Updated last week
• mrc-ide / squire
  SEIR transmission model of COVID-19. Documentation at:
  ☆52Updated last year
• EpiModel / EpiModel-Gallery
  Gallery of Network-Based Epidemic Model Templates for EpiModel
  ☆55Updated last year
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆42Updated last week
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 4 years ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• timriffe / covid_age
  COVerAGE-DB: COVID-19 cases, deaths, and tests by age and sex
  ☆58Updated last year
• european-modelling-hubs / covid19-forecast-hub-europe_archive
  European Covid-19 Forecast Hub.
  ☆49Updated last year
• ImperialCollegeLondon / epidemia
  epidemia package
  ☆48Updated 3 years ago
• epiforecasts / EpiNow2
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆132Updated this week
• HopkinsIDD / hit-covid
  Data and Codebook for the HIT-COVID Project
  ☆22Updated 4 years ago
• adamkucharski / scrapR
  Extract raw underlying data from PDF figures
  ☆55Updated last year
• oswaldogressani / EpiLPS
  A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.
  ☆20Updated 2 months ago
• mhoehle / STA427_SM4IDE
  Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
  ☆20Updated 3 years ago
• cdcepi / Flusight-forecast-data
  ☆39Updated last year
• mponce0 / covid19.analytics
  R package to obtain and analyze live data from the nCOVID19 coronavirus
  ☆35Updated 3 years ago
• mrc-ide / covid19-forecasts-orderly
  ☆29Updated 2 months ago
• OxfordDemSci / ex2020
  Code to replicate 'Quantifying impacts of the COVID-19 pandemic through life expectancy losses: a population-level study of 29 countries'
  ☆17Updated 4 years ago
• myhelix / helix-covid19db
  Helix® COVID-19 Surveillance
  ☆16Updated 7 months ago
• reichlab / covidHubUtils
  Utility functions for the COVID-19 forecast hub
  ☆18Updated last year
• nicholasdavies / newcovid
  ☆27Updated 4 years ago
• mhoehle / mt3002-summer2020
  Video lectures, slides and code for "The Mathematics and Statistics of Infectious Disease Outbreaks" course at Stockholm University
  ☆35Updated 5 years ago
• epiforecasts / covid
  Temporal variation in transmission during the COVID-19 outbreak
  ☆109Updated 3 years ago
• cdcepi / FluSight-forecasts
  FluSight Forecast Submissions
  ☆19Updated last year
• jstockwin / EpiEstimApp
  Source code for the EpiEstim app.
  ☆33Updated 3 months ago
• mrc-ide / malariasimulation
  The malaria model
  ☆20Updated 2 weeks ago
• mrc-ide / reactidd
  This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…
  ☆17Updated last year
• mrc-ide / sircovid
  ☆29Updated 5 months ago
• midas-network / covid19-scenario-modeling-hub_archive
  COVID-19 Scenario Modeling Hub
  ☆67Updated 6 months ago