Pipeline Builder is a JavaScript library for visualizing and constructing bioinformatics workflows, using Workflow Description Language (WDL)
☆60Apr 8, 2024Updated 2 years ago
Alternatives and similar repositories for pipeline-builder
Users that are interested in pipeline-builder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated 2 years ago
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated 2 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 6 years ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…☆14Jun 5, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Convert CWL to WDL☆17Oct 17, 2016Updated 10 years ago
- New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high perform…☆171Aug 28, 2026Updated 2 months ago
- HGVS variant description extractor☆11Apr 13, 2026Updated 6 months ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆73Aug 22, 2026Updated 2 months ago
- Specification for the Workflow Description Language (WDL).☆855Sep 14, 2026Updated last month
- ☆14Dec 13, 2023Updated 2 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- PREFACE -- PREdict FetAl ComponEnt☆16Updated this week
- CWL for GDC DNASeq workflows☆23Sep 27, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- FireCloud user interface for web browsers.☆19Aug 22, 2025Updated last year
- Trigger CWL workflows via GA4GH WES and TES☆18Updated this week
- Expanded STR algorithm for Illumina sequencing data☆24Sep 11, 2022Updated 4 years ago
- Workflow Execution Service Backend☆21Oct 26, 2026Updated last week
- Variant Calling Pipeline in Cromwell/WDL☆22Feb 22, 2020Updated 6 years ago
- ☆12Aug 15, 2026Updated 2 months ago
- ☆10Mar 28, 2022Updated 4 years ago
- all that favours real-time democracy☆16Aug 7, 2022Updated 4 years ago
- ABIF parser, writer and generator☆11Dec 8, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,083Updated this week
- WDL plugin for pytest☆49Aug 1, 2023Updated 3 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Jan 24, 2020Updated 6 years ago
- A PostgreSQL foreign data wrapper for VCF files.☆18May 8, 2017Updated 9 years ago
- CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis☆10May 16, 2019Updated 7 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆74Dec 2, 2022Updated 3 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- T530 specific settings for Ubuntu 14.04LTS☆11Jan 16, 2017Updated 9 years ago
- Read, analyse, compute, write and convert MTG files☆11Oct 28, 2026Updated last week
- LAAVA: Long-read AAV Analysis☆13Oct 27, 2026Updated last week
- ☆16Nov 21, 2025Updated 11 months ago
- A public catalog of Benchling App examples written in Python.☆18Jul 21, 2026Updated 3 months ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Jul 22, 2024Updated 2 years ago
- Quantitation and visualization of differential alternative splicing events☆11May 2, 2023Updated 3 years ago