Pipeline Builder is a JavaScript library for visualizing and constructing bioinformatics workflows, using Workflow Description Language (WDL)
☆60Apr 8, 2024Updated 2 years ago
Alternatives and similar repositories for pipeline-builder
Users that are interested in pipeline-builder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated last year
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high perform…☆170Jul 30, 2025Updated 9 months ago
- HGVS variant description extractor☆11Apr 13, 2026Updated last month
- PREFACE -- PREdict FetAl ComponEnt☆15Jan 2, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆14Dec 13, 2023Updated 2 years ago
- Specification for the Workflow Description Language (WDL).☆850Updated this week
- Expanded STR algorithm for Illumina sequencing data☆23Sep 11, 2022Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 5 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- A PostgreSQL foreign data wrapper for VCF files.☆18May 8, 2017Updated 9 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- WDL plugin for pytest☆48Aug 1, 2023Updated 2 years ago
- ABIF parser, writer and generator☆11Dec 8, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Jan 24, 2020Updated 6 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,064May 12, 2026Updated last week
- D3/Angular chromosome visual representation☆19Jul 19, 2015Updated 10 years ago
- satMiner: A Toolkit to NGS satellite DNA mining and analysis☆12Mar 10, 2022Updated 4 years ago
- Quantitation and visualization of differential alternative splicing events☆11May 2, 2023Updated 3 years ago
- Scripts related to building major-allele references for Bowtie and Bowtie 2☆13Jun 3, 2021Updated 4 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- ☆35Feb 16, 2023Updated 3 years ago
- Analyses pipelines that I use for my work☆12Jul 7, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CRISPR/Cas9 guide RNA Design☆24Feb 20, 2024Updated 2 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- ParallelClusterMaker is a command line toolkit for automating the creation and destruction of AWS ParallelCluster stacks.☆15Sep 26, 2019Updated 6 years ago
- Crossmapped phenotype ontologies for the oncology domain☆14Mar 29, 2026Updated last month
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 5 months ago
- Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models☆33Jan 7, 2022Updated 4 years ago
- A simple and ready to use akka http client for building HTTP requests and processing responses with custom response handlers☆11Dec 23, 2019Updated 6 years ago
- A command line utilty for working with BINSEQ files☆38Mar 31, 2026Updated last month
- (current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing …☆23May 9, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…☆14Jun 5, 2020Updated 5 years ago
- Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.☆11Mar 7, 2019Updated 7 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆10Mar 14, 2026Updated 2 months ago
- ☆13Aug 1, 2024Updated last year
- Provides different code samples for Apache Beam and DataFlow☆14Sep 29, 2023Updated 2 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Nov 25, 2023Updated 2 years ago