Alternatives and similar repositories for WholeCell:

Users that are interested in WholeCell are comparing it to the libraries listed below

• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆99Updated last week
• 20n / act
  Computational synthetic biology: Predicting DNA edits for bioengineering
  ☆85Updated 7 years ago
• ecell / ecell4_base
  An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phen…
  ☆63Updated 9 months ago
• idekerlab / DCell
  DCell browser and gene deletion simulator
  ☆122Updated 2 years ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆172Updated 3 months ago
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆290Updated 10 months ago
• autoprotocol / autoprotocol-python
  Python library for generating Autoprotocol
  ☆122Updated last year
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆62Updated last month
• strateos / transcriptic
  Transcriptic CLI & Python Client Library
  ☆48Updated last year
• MyersResearchGroup / iBioSim
  iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importin…
  ☆56Updated last month
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆114Updated 2 years ago
• MicrosoftResearch / Azimuth
  Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
  ☆233Updated 4 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆80Updated 5 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆106Updated 4 years ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• CIDARLAB / Cello-v2
  Cello v2 is the continuation of the Cello genetic circuit design software.
  ☆56Updated 2 years ago
• virtualcell / vcell
  Virtual Cell Framework
  ☆72Updated this week
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆34Updated last year
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆110Updated 2 months ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆60Updated 3 months ago
• SynBioDex / pySBOL
  SWIG-Python wrappers implementing SBOL 2.2
  ☆25Updated 3 years ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆54Updated last year
• wilzbach / msa
  Modular BioJS compoment for a multiple sequence alignment
  ☆169Updated 2 years ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆148Updated 3 weeks ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆171Updated this week
• kthorn / FPvisualization
  Visualization of fluorescent protein properties with d3.js
  ☆13Updated 8 years ago
• Autodesk / bionano-wetLabAccelerator
  A tool for researchers working in synthetic biology and virology to design robotic wet lab protocols using a visual UI without coding.
  ☆33Updated 6 years ago
• JBEI / ART
  A machine learning tool to improve the effectiveness of strain engineering in synthetic biology
  ☆55Updated last year
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆49Updated 2 years ago