Mycoplasma genitalium whole-cell model
☆127Oct 6, 2015Updated 10 years ago
Alternatives and similar repositories for WholeCell
Users that are interested in WholeCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Feb 29, 2016Updated 10 years ago
- Whole cell model of E. coli implemented with Vivarium☆29Updated this week
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆43May 31, 2026Updated last week
- An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phen…☆62Apr 2, 2026Updated 2 months ago
- Whole-cell modeling tutorials☆17Jun 26, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 4 months ago
- ☆21Nov 13, 2018Updated 7 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- Visualization of fluorescent protein properties with d3.js☆13Jan 18, 2017Updated 9 years ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 9 years ago
- ☆11Sep 15, 2015Updated 10 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Cytoscape.js wrapper for Streamlit☆34Aug 30, 2022Updated 3 years ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆15May 28, 2026Updated last week
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 7 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 3 weeks ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- Release of the whole cell E. coli model.☆77Dec 10, 2024Updated last year
- Dimensionality reduction and batch integration methods for single cell data☆17Feb 9, 2023Updated 3 years ago
- A method for identifying deleterious protein variation.☆11Nov 14, 2016Updated 9 years ago
- DCell browser and gene deletion simulator☆125Dec 14, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- The physiologically-based whole-body model of the glucose-insulin-glucagon regulatory system☆26Mar 23, 2019Updated 7 years ago
- miredo for android☆11Jan 5, 2014Updated 12 years ago
- Implementation of Variational Intrinsic Control in tensorflow☆11Apr 5, 2017Updated 9 years ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 3 years ago
- Pytorch implementation of Human-Level Control through Deep Reinforcement Learning☆11May 31, 2017Updated 9 years ago
- ☆15Jun 4, 2014Updated 12 years ago
- RSS reader in Python built on feedparser.☆12Sep 19, 2014Updated 11 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- A package for representing VTK data types and manipulating them in Julia.☆10Sep 24, 2023Updated 2 years ago
- SNAP repository for Ringo☆15Jul 25, 2017Updated 8 years ago
- A Python MPI Pool☆17Jun 21, 2020Updated 5 years ago
- WIP implementation of "The Predictron: End-To-End Learning and Planning" (http://arxiv.org/abs/1612.08810) in Chainer☆11Dec 31, 2016Updated 9 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 9 months ago