Mycoplasma genitalium whole-cell model
☆130Oct 6, 2015Updated 10 years ago
Alternatives and similar repositories for WholeCell
Users that are interested in WholeCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Public source code for AnimatLab neuromechanical simulator system☆15Oct 4, 2016Updated 9 years ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆44Updated this week
- Whole cell model of E. coli implemented with Vivarium☆32Updated this week
- An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phen…☆63Jun 24, 2026Updated 2 months ago
- Whole-cell modeling tutorials☆18Jun 26, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 7 months ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- A community resource to develop ontologies to map Bio2RDF to community developed ontologies☆18Oct 31, 2016Updated 9 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- An open platform for capturing, integrating, storing, and sharing biological knowledge in and across organizations.☆23Jan 28, 2017Updated 9 years ago
- NIF Standard Ontologies (NIFSTD)☆63Jul 24, 2026Updated last month
- An RNA pipeline built on top of ADAM. Apache 2 licensed.☆19Jan 19, 2018Updated 8 years ago
- ☆18Aug 4, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Toolkit for discovering and aggregating data for whole-cell modeling☆16Jan 19, 2022Updated 4 years ago
- OpenWorm main website☆30Jul 31, 2026Updated last month
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- MOVED TO: https://cirosantilli.com#how-to-teach☆12Jul 27, 2019Updated 7 years ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 10 years ago
- ☆11Sep 15, 2015Updated 11 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Modeling molecular ensembles with scalable data structures and parallel computing☆37Mar 11, 2026Updated 6 months ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 3 years ago
- The physiologically-based whole-body model of the glucose-insulin-glucagon regulatory system☆27Mar 23, 2019Updated 7 years ago
- Dimensionality reduction and batch integration methods for single cell data☆17Feb 9, 2023Updated 3 years ago
- Visualization of fluorescent protein properties with d3.js☆13Jan 18, 2017Updated 9 years ago
- A method for identifying deleterious protein variation.☆11Nov 14, 2016Updated 9 years ago
- CSS3 particles using animation and transform3d☆16Jan 12, 2013Updated 13 years ago
- Python package for creating, calibrating and simulating RBA models☆14Aug 19, 2026Updated last month
- Pytorch implementation of Human-Level Control through Deep Reinforcement Learning☆11May 31, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- miredo for android☆11Jan 5, 2014Updated 12 years ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆17Updated this week
- ☆15Jun 4, 2014Updated 12 years ago
- NVIDIA GPU Computing SDK 4.2.9. Fixing some stupid compilation bugs in the make files of the projects.☆18Jul 3, 2012Updated 14 years ago
- RSS reader in Python built on feedparser.☆12Sep 19, 2014Updated 12 years ago
- Galaxy Wrappers and helpers for the MISA ttols☆11Oct 11, 2014Updated 11 years ago
- Antiquity - A versioned graph extension.☆39Feb 8, 2022Updated 4 years ago