Alternatives and similar repositories for WholeCell:

Users that are interested in WholeCell are comparing it to the libraries listed below

• ecell / ecell4_base
  An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phen…
  ☆63Updated 10 months ago
• idekerlab / DCell
  DCell browser and gene deletion simulator
  ☆122Updated 2 years ago
• 20n / act
  Computational synthetic biology: Predicting DNA edits for bioengineering
  ☆85Updated 7 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆63Updated 2 months ago
• strateos / transcriptic
  Transcriptic CLI & Python Client Library
  ☆48Updated last year
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆61Updated 4 months ago
• Autodesk / bionano-wetLabAccelerator
  A tool for researchers working in synthetic biology and virology to design robotic wet lab protocols using a visual UI without coding.
  ☆33Updated 6 years ago
• autoprotocol / autoprotocol-python
  Python library for generating Autoprotocol
  ☆122Updated last year
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆104Updated this week
• cangermueller / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆143Updated 5 years ago
• virtualcell / vcell
  Virtual Cell Framework
  ☆74Updated this week
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• ananswam / bioscrape
  bioscrape (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
  ☆17Updated 4 years ago
• SynBioDex / SBOLDesigner
  SBOL Designer Project
  ☆31Updated 3 years ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆175Updated 4 months ago
• lucapinello / CRISPResso
  Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
  ☆135Updated 5 years ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆114Updated 2 years ago
• MyersResearchGroup / iBioSim
  iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importin…
  ☆56Updated 2 months ago
• SynBioDex / libSBOLj
  Java Library for Synthetic Biology Open Language (SBOL)
  ☆38Updated 2 years ago
• RamanLab / ReactionMiner
  Tool to predict (bio)chemical reactions using graph mining.
  ☆22Updated 7 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆110Updated 3 weeks ago
• ddofer / ProFET
  ProFET: Protein Feature Engineering Toolkit for Machine Learning
  ☆57Updated 9 years ago
• ginkgobioworks / edge
  Efficiently keep track of changes to genomes
  ☆38Updated 7 months ago
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆292Updated 11 months ago
• YeoLab / flotilla
  Reproducible machine learning analysis of gene expression and alternative splicing data
  ☆127Updated last year
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• ElofssonLab / pcons-fold
  Pipeline for protein folding using PconsC and Rosetta
  ☆18Updated 6 years ago
• ialbert / booleannet
  Boolean Network Modeling
  ☆38Updated 5 years ago
• SBRG / MASSpy
  ☆22Updated 2 years ago