mcellteam / cellblenderLinks
Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models
☆68Updated 7 months ago
Alternatives and similar repositories for cellblender
Users that are interested in cellblender are comparing it to the libraries listed below
Sorting:
- MCell Monte Carlo Simulator of Cellular Microphysiology☆37Updated 7 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆119Updated last week
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated this week
- Integrated Cell project implemented in pytorch☆44Updated 2 months ago
- Community-contributed and experimental CellProfiler modules.☆72Updated last month
- Rule-based modeling framework☆65Updated 6 months ago
- The Fluorescent Protein Database☆75Updated this week
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆42Updated this week
- (Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.☆12Updated 7 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated 2 years ago
- File format for 96-well plate layouts.☆23Updated 2 years ago
- Python Environment for Modeling and Simulating Biological Systems☆130Updated 2 weeks ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated 2 months ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Updated last year
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆55Updated this week
- biotoolsSchema : Tool description data model for computational tools in life sciences☆39Updated last week
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 4 years ago
- Python library for calling Cytoscape Automation via CyREST☆84Updated 4 months ago
- Multi-Scale Integrated Cell☆36Updated 3 years ago
- Python package for processing image-based profiling data☆129Updated last week
- Bio3D an HTML5 visualization tool for biological datasets☆25Updated 5 years ago
- A project to capture biological pathway data from academic papers☆29Updated 8 months ago
- A parser to read .imzML files with python☆47Updated last year
- Clinical oncology tumor board decision support system made by the Decider project.☆13Updated 6 months ago
- The Open Lab Book: A collection of freely distributable scientific protocols☆29Updated 5 years ago
- Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)☆12Updated 6 years ago
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆45Updated 2 weeks ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆31Updated 3 years ago
- A package for downloading and uploading figshare data☆25Updated 2 years ago
- Core Interface and Engine for Vivarium 1.0☆34Updated last year