Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models
☆69May 2, 2025Updated 10 months ago
Alternatives and similar repositories for cellblender
Users that are interested in cellblender are comparing it to the libraries listed below
Sorting:
- MCell Monte Carlo Simulator of Cellular Microphysiology☆38May 2, 2025Updated 10 months ago
- Produces visualizations of network data in Blender.☆62Jun 21, 2020Updated 5 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆19Jun 1, 2023Updated 2 years ago
- A script for importing molecular geometries into Blender☆35Mar 28, 2022Updated 3 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- a python library for working with flow cytometry data.☆14May 11, 2015Updated 10 years ago
- Ruby-GNOME2 compatible bindings for Gtk Webkit☆29Aug 12, 2013Updated 12 years ago
- Plugins by Clement Levallois for Gephi☆35Dec 3, 2017Updated 8 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Feb 23, 2026Updated last week
- An updated version of the Open Source Brain platform☆19Sep 19, 2025Updated 5 months ago
- AddOn for Blender to do molecular work☆116Apr 9, 2020Updated 5 years ago
- ☆24Dec 17, 2025Updated 2 months ago
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- Core functionality of NanoJ☆17Mar 22, 2024Updated last year
- Example showing how LaTeX can be used to produce a nice-looking curriculum vitae (CV).☆17Jan 11, 2026Updated last month
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- Notebooks for VoidSeg☆17Feb 10, 2020Updated 6 years ago
- lazyarray is a Python package that provides a lazily-evaluated numerical array class, larray, based on and compatible with NumPy arrays.☆22Jan 21, 2026Updated last month
- Repository of tutorials for The COBRA Toolbox☆24Feb 6, 2026Updated 3 weeks ago
- ☆20Updated this week
- EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.☆19Jun 14, 2022Updated 3 years ago
- A set of data-oriented wrappers around the python API of Blender.☆26Jan 22, 2026Updated last month
- Image deconvolution algorithms in python☆23Aug 3, 2022Updated 3 years ago
- A package for downloading and uploading figshare data☆27May 22, 2023Updated 2 years ago
- ☆23Mar 26, 2021Updated 4 years ago
- Fast filtering and animation of large dynamic networks☆39May 24, 2016Updated 9 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Feb 26, 2026Updated last week
- ☆24Aug 27, 2020Updated 5 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phen…☆63Nov 23, 2025Updated 3 months ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆10Jan 20, 2022Updated 4 years ago
- GATK4 Best Practice Nextflow Pipeline☆33Jan 18, 2018Updated 8 years ago
- A Web-Based Visualization Tool for Biclustering of Multivariate Time Series☆10Feb 17, 2023Updated 3 years ago
- The BioPAX Object Model, API and utilities implemented in Java☆27Jul 4, 2024Updated last year
- AICS ML Segmentation (One-Way) Mirror☆27May 2, 2021Updated 4 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated last year
- SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)☆65May 9, 2020Updated 5 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Aug 5, 2022Updated 3 years ago