Alternatives and similar repositories for cellblender

Users that are interested in cellblender are comparing it to the libraries listed below

• mcellteam / mcell
  MCell Monte Carlo Simulator of Cellular Microphysiology
  ☆37Updated 9 months ago
• biosimulations / biosimulations
  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
  ☆42Updated this week
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆123Updated last week
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated 2 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆66Updated 8 months ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆131Updated 2 months ago
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆24Updated 2 years ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆72Updated 3 weeks ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆17Updated this week
• FPvisualization / fpvisualization.github.io
  Visualization of fluorescent protein properties with d3.js. Obsolete.
  ☆12Updated last year
• tlambert03 / FPbase
  The Fluorescent Protein Database
  ☆78Updated last week
• MonZop / BioBlender
  AddOn for Blender to do molecular work
  ☆116Updated 5 years ago
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated 3 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• pybel / pybel
  🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
  ☆136Updated last year
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆34Updated 3 years ago
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆55Updated this week
• erolkavvas / metabolic-allele-classifiers
  A flux balance analysis machine learning classifier for microbial GWAS
  ☆14Updated 6 years ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆39Updated 4 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated last month
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 10 years ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆44Updated last week
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆189Updated 6 months ago
• vindelorme / PlateEditor
  Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis
  ☆22Updated 2 months ago
• bio-tools / biotoolsRegistry
  biotoolsregistry: discovery portal for bioinformatics
  ☆82Updated this week
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆24Updated 2 years ago
• dhimmel / lincs
  Library of Integrated Cellular Signatures L1000
  ☆31Updated 3 years ago
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆32Updated 3 years ago
• mfitzp / theolb
  The Open Lab Book: A collection of freely distributable scientific protocols
  ☆31Updated 5 years ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 10 months ago