Alternatives and similar repositories for cellblender

Users that are interested in cellblender are comparing it to the libraries listed below

• mcellteam / mcell
  MCell Monte Carlo Simulator of Cellular Microphysiology
  ☆37Updated 6 months ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆69Updated last week
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆17Updated this week
• tlambert03 / FPbase
  The Fluorescent Protein Database
  ☆71Updated this week
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated 2 weeks ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 5 months ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆43Updated 3 weeks ago
• biosimulations / biosimulations
  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
  ☆42Updated this week
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆114Updated this week
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆38Updated 3 years ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated 3 months ago
• cognoma / figshare
  A package for downloading and uploading figshare data
  ☆24Updated 2 years ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆126Updated this week
• vivarium-collective / vivarium-core
  Core Interface and Engine for Vivarium 1.0
  ☆33Updated 10 months ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆188Updated 3 months ago
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated 2 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 3 months ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated 6 months ago
• FPvisualization / fpvisualization.github.io
  Visualization of fluorescent protein properties with d3.js. Obsolete.
  ☆12Updated last year
• CompuCell3D / CompuCell3D
  CompuCell3D public source code repository
  ☆74Updated 2 weeks ago
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆52Updated last week
• HenriquesLab / NanoJ-Fluidics
  Manual, source-code and binaries for the NanoJ-Fluidics project
  ☆50Updated 2 years ago
• dhimmel / lincs
  Library of Integrated Cellular Signatures L1000
  ☆31Updated 3 years ago
• idekerlab / DCell
  DCell browser and gene deletion simulator
  ☆124Updated 2 years ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆114Updated 3 years ago
• mfitzp / theolb
  The Open Lab Book: A collection of freely distributable scientific protocols
  ☆28Updated 5 years ago
• bio-tools / biotoolsSchema
  biotoolsSchema : Tool description data model for computational tools in life sciences
  ☆39Updated this week
• lewlin / a-large-image-tiler
  (Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.
  ☆12Updated 7 years ago