mcellteam / cellblenderLinks
Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models
☆67Updated 6 months ago
Alternatives and similar repositories for cellblender
Users that are interested in cellblender are comparing it to the libraries listed below
Sorting:
- MCell Monte Carlo Simulator of Cellular Microphysiology☆37Updated 6 months ago
- Integrated Cell project implemented in pytorch☆44Updated last month
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated this week
- Rule-based modeling framework☆65Updated 5 months ago
- Community-contributed and experimental CellProfiler modules.☆70Updated last week
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated last month
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆31Updated 3 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Updated last year
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆115Updated this week
- Python package for processing image-based profiling data☆127Updated 2 weeks ago
- Cloud engine and platform for metabolite annotation for imaging mass spectrometry☆52Updated last week
- The Fluorescent Protein Database☆75Updated this week
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Core Interface and Engine for Vivarium 1.0☆33Updated 11 months ago
- File format for 96-well plate layouts.☆23Updated 2 years ago
- (Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.☆12Updated 7 years ago
- AddOn for Blender to do molecular work☆115Updated 5 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated 2 years ago
- ☆18Updated 8 years ago
- Python library for calling Cytoscape Automation via CyREST☆84Updated 3 months ago
- Multi-Scale Integrated Cell☆36Updated 3 years ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆42Updated last week
- Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis☆22Updated 9 months ago
- A parser to read .imzML files with python☆46Updated last year
- Jupyter Notebooks for the Image Data Resource☆18Updated 3 weeks ago
- ☆25Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆43Updated last year