Alternatives and similar repositories for cellblender

Users that are interested in cellblender are comparing it to the libraries listed below

• mcellteam / mcell
  MCell Monte Carlo Simulator of Cellular Microphysiology
  ☆35Updated 2 months ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆14Updated this week
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆67Updated last week
• bgruening / docker-galaxy-imaging
  Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)
  ☆12Updated 5 years ago
• tlambert03 / FPbase
  The Fluorescent Protein Database
  ☆69Updated last week
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆50Updated 3 weeks ago
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated 2 years ago
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated last year
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆41Updated last month
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆63Updated last month
• FPvisualization / fpvisualization.github.io
  Visualization of fluorescent protein properties with d3.js. Obsolete.
  ☆12Updated last year
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆33Updated last year
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated 3 months ago
• mfitzp / theolb
  The Open Lab Book: A collection of freely distributable scientific protocols
  ☆28Updated 5 years ago
• HenriquesLab / NanoJ-Fluidics
  Manual, source-code and binaries for the NanoJ-Fluidics project
  ☆50Updated 2 years ago
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆40Updated 8 months ago
• PabloEnmanuelRamos / BioBlender21
  Blender plugin to process biological data and molecular work.
  ☆89Updated 3 years ago
• vindelorme / PlateEditor
  Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis
  ☆22Updated 5 months ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆112Updated this week
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆42Updated 2 weeks ago
• KlugerLab / deepcytof
  ☆18Updated 8 years ago
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆28Updated 2 years ago
• biosimulations / biosimulations
  A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
  ☆41Updated last week
• cognoma / figshare
  A package for downloading and uploading figshare data
  ☆23Updated 2 years ago
• vivarium-collective / vivarium-core
  Core Interface and Engine for Vivarium 1.0
  ☆32Updated 7 months ago
• taborlab / FlowCal
  Python Flow Cytometry Calibration Library
  ☆51Updated 2 months ago
• CellProfiler / stitching
  Image stitching
  ☆12Updated 6 years ago
• BorgwardtLab / maldi-learn
  Software library for Maldi-Tof preprocessing and machine learning analysis.
  ☆35Updated 2 years ago