Alternatives and similar repositories for transcriptic

Users that are interested in transcriptic are comparing it to the libraries listed below

• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated this week
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆64Updated 7 months ago
• autoprotocol / autoprotocol-python
  Python library for generating Autoprotocol
  ☆124Updated 2 years ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆110Updated 5 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆74Updated last year
• Opentrons / Protocols
  Repository for Public Protocols
  ☆60Updated last year
• JBEI / ART
  A machine learning tool to improve the effectiveness of strain engineering in synthetic biology
  ☆60Updated 3 weeks ago
• debbiemarkslab / EVzoom
  Visually explore covariation in protein families
  ☆40Updated 6 years ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆18Updated 2 years ago
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆110Updated 5 years ago
• hsalis / Ribosome-Binding-Site-Calculator-v1.0
  The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…
  ☆59Updated 10 years ago
• ginkgobioworks / edge
  Efficiently keep track of changes to genomes
  ☆38Updated last year
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆29Updated 8 years ago
• SynBioHub / synbiohub
  Web application enabling users and software to browse, upload, and share synthetic biology designs
  ☆79Updated this week
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆34Updated 3 years ago
• dhimmel / lincs
  Library of Integrated Cellular Signatures L1000
  ☆31Updated 3 years ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆65Updated last year
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆34Updated last year
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆44Updated this week
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆55Updated 6 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆56Updated 9 months ago
• midas-wyss / engineered-riboregulator-ML
  Sequence-to-function deep learning frameworks for engineered riboregulators
  ☆14Updated 2 years ago
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆36Updated 7 months ago
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆53Updated 3 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆19Updated 6 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated last month