Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences
☆15Dec 9, 2016Updated 9 years ago
Alternatives and similar repositories for TensorFlow-DNNs-for-Predicting-DNA-Transcription-Factor-Binding
Users that are interested in TensorFlow-DNNs-for-Predicting-DNA-Transcription-Factor-Binding are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 3 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆17Sep 30, 2024Updated last year
- TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism☆25Jan 14, 2021Updated 5 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆18Apr 8, 2021Updated 5 years ago
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆21May 7, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 3 years ago
- RNAcode - Detecting protein coding genes in multiple sequence alignment☆26Aug 22, 2024Updated last year
- Preparation of Object Dating Ranges for Density Plots☆10Jan 28, 2024Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 7 years ago
- Documentation for PEP specification and all PEPkit software☆10Mar 25, 2026Updated 4 months ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated last year
- Predicting transcription factor binding in single cells through deep learning☆14Oct 14, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package for visualizing comparison between two distributions.☆12Oct 30, 2018Updated 7 years ago
- Profile and Heatmap Visualization by Using ggplot2 and grid☆13Nov 21, 2023Updated 2 years ago
- Procedural world game based on raycast rendering and sparse voxel octree technologies with using Vulkan API☆12May 17, 2026Updated 2 months ago
- An R wrapper for running the SigProfilerPlotting framework☆10Jan 29, 2026Updated 6 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆18May 10, 2026Updated 3 months ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 9 months ago
- Public repository of Google Colab notebooks to use with Phenix☆12Mar 19, 2025Updated last year
- Training and testing of DeepBind models.☆104Oct 19, 2015Updated 10 years ago
- ☆15Feb 25, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CRISPR Cas9 ontarget prediction software☆34Jul 14, 2026Updated 3 weeks ago
- Suit of R-scripts to perform landscape genomic analyses☆15May 25, 2020Updated 6 years ago
- PAthological Data Obsession - cloud native digital pathology datasets☆18Mar 1, 2023Updated 3 years ago
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆11Jul 29, 2026Updated last week
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- Whole-cell modeling tutorials☆18Jun 26, 2020Updated 6 years ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Updated this week
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- Experimental Code to Render a Voxel Volume using 6 Height Maps (+-XYZ) to define the Object☆20Aug 5, 2015Updated 11 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- Evolving Neural Network through the Reverse Encoding Tree☆15Jun 2, 2021Updated 5 years ago
- Interactive software to analyze and browse mass spectrometry data☆21Jul 3, 2025Updated last year
- SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm☆21Apr 8, 2025Updated last year
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆11Updated this week
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago