monarch-initiative / embiggenLinks
๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.
โ42Updated last week
Alternatives and similar repositories for embiggen
Users that are interested in embiggen are comparing it to the libraries listed below
Sorting:
- ๐ Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.โ40Updated 3 months ago
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ57Updated 2 weeks ago
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ74Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated last year
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ138Updated this week
- Ontology cross-reference and mapping serviceโ20Updated last month
- Faultless AST for Open Biomedical Ontologies in Python.โ32Updated last week
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.โ13Updated 5 months ago
- โ21Updated last week
- Data Ingestion Pipeline for Monarchโ57Updated 3 years ago
- PyBioPAX: A python implementation of the BioPAX object modelโ25Updated last year
- KGX is a Python library for exchanging Knowledge Graphsโ137Updated last week
- A stitching platform for InXightโ15Updated 9 months ago
- โ24Updated 5 years ago
- NetworkX-based Python library for representing ontologiesโ93Updated 2 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)โ42Updated this week
- โ15Updated 3 weeks ago
- ๐ช What's the latest version for each database?โ28Updated this week
- Fission Yeast Phenotype Ontologyโ16Updated last month
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ45Updated last month
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.โ12Updated this week
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 6 months ago
- Build for NCBITaxonโ30Updated last month
- Github repo for the Experimental Factor Ontology (EFO)โ62Updated last week
- โ15Updated last week
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.โ26Updated 3 months ago
- OBO-formatted ontologies โ networkx (Python 3)โ150Updated 9 months ago
- Workshop on Synergizing Biomedical Ontologies, July 14-16 (Virtual)โ12Updated 4 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ16Updated 6 months ago
- ๐ก Unified access to OLS instances like from the EBI and TIBโ13Updated last week