monarch-initiative / embiggenLinks
๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.
โ42Updated last year
Alternatives and similar repositories for embiggen
Users that are interested in embiggen are comparing it to the libraries listed below
Sorting:
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ54Updated last month
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ69Updated this week
- ๐ Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.โ40Updated 9 months ago
- โ15Updated 3 weeks ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubโ32Updated last year
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 4 months ago
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.โ13Updated last week
- Faultless AST for Open Biomedical Ontologies in Python.โ29Updated 2 weeks ago
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.โ23Updated this week
- Ontology cross-reference and mapping serviceโ19Updated last month
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ42Updated 2 weeks ago
- KGX is a Python library for exchanging Knowledge Graphsโ127Updated last week
- โ24Updated 4 years ago
- NetworkX-based Python library for representing ontologiesโ90Updated last year
- Standardized identifiers and OWL classes for chromosomes and chromosomal parts across speciesโ13Updated this week
- Summary Dashboard for Open Biological and Biomedical Ontologiesโ21Updated 5 months ago
- ๐ช What's the latest version for each database?โ27Updated this week
- โ18Updated 3 weeks ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.โ15Updated last month
- PyBioPAX: A python implementation of the BioPAX object modelโ24Updated last year
- A motley crew of agents developed by the Monarch Initiativeโ14Updated this week
- Network Embedding All the Thingsโ18Updated 2 years ago
- โ12Updated 3 months ago
- Data ingest application for Monarch Initiative knowledge graph using Kozaโ17Updated last week
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ131Updated this week
- First pass at a thin wrapper around the Monarch API and ChatGPT pluginโ12Updated 2 months ago
- Fission Yeast Phenotype Ontologyโ16Updated this week
- Medical action ontologyโ56Updated this week
- A collection of useful python functions for looking up information and working with the Biolink Modelโ24Updated last week
- Bayesian OWL ontology mergingโ29Updated this week