i2b2-omop / i2o-transform
PCORnet Ontology to OMOP - beta!
☆11Updated last year
Alternatives and similar repositories for i2o-transform:
Users that are interested in i2o-transform are comparing it to the libraries listed below
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆86Updated last year
- Data Ingestion and Harmonization☆43Updated 2 years ago
- ☆25Updated last month
- An R package for evaluating phenotype algorithms.☆17Updated 5 months ago
- ☆27Updated 6 years ago
- Repository for development of the genomic module of the CDM.☆20Updated 5 years ago
- The PCORnet Common Data Model (CDM) Forum guidance repository contains materials intended to support implementation efforts by data partn…☆30Updated 4 years ago
- Transform the OMOP model to graph model☆21Updated 3 months ago
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 4 months ago
- DQe-c is a tool for examining completeness in clinical research data repositories.☆8Updated 7 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆28Updated 3 years ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- ☆14Updated last week
- Leaf Clinical Data Explorer☆91Updated 4 months ago
- Training materials for Vocabulary & CDM Tutorial.☆21Updated 5 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆23Updated 3 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆60Updated this week
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆38Updated 11 months ago
- https://celehs.github.io/PheCAP/☆21Updated 3 years ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆31Updated last year
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆43Updated 5 months ago
- Course materials for OHDSI ETL tutorial☆45Updated 4 months ago
- R package to easily interface with OMOP-formatted EHR data.☆35Updated 5 years ago
- ARCH i2b2 PCORnet Ontology☆14Updated 5 years ago
- NCATS Biomedical Translator Reasoners Standard API☆36Updated 5 months ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆34Updated last year
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆79Updated this week
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆62Updated last year
- R package for delineating temporal dataset shifts in Eletronic Health Records☆17Updated 10 months ago