i2b2-omop / i2o-transformLinks
PCORnet Ontology to OMOP - beta!
☆11Updated 2 years ago
Alternatives and similar repositories for i2o-transform
Users that are interested in i2o-transform are comparing it to the libraries listed below
Sorting:
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Updated 2 years ago
- Leaf Clinical Data Explorer☆98Updated 3 months ago
- Oncology Working Group Repository☆59Updated last month
- ☆25Updated last year
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆66Updated 7 months ago
- Data Ingestion and Harmonization☆46Updated 4 months ago
- Mondo Disease Ontology☆289Updated this week
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆33Updated 2 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆200Updated last year
- ☆31Updated 7 years ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆120Updated 11 months ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated 2 years ago
- loinc2hpo Annotation Data☆26Updated 3 years ago
- Repository for development of the genomic module of the CDM.☆25Updated 6 years ago
- The PCORnet Common Data Model (CDM) Forum guidance repository contains materials intended to support implementation efforts by data partn…☆32Updated 5 years ago
- Main OMOPonFHIR Settings☆46Updated 4 years ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆57Updated last week
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆72Updated 5 months ago
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 5 months ago
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated 2 weeks ago
- Repository for the GA4GH phenopacket schema☆93Updated 3 weeks ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆84Updated 3 weeks ago
- [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM☆35Updated last month
- NCATS Biomedical Translator Reasoners Standard API☆40Updated 2 weeks ago
- ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases☆55Updated 2 weeks ago
- Ontology mapping for Open Targets☆21Updated 3 weeks ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated 3 years ago
- 🔥 FHIR 101 - A Practical Guide☆42Updated 5 years ago
- vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration☆40Updated last year
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆58Updated last week