aphp / foldedtensorLinks
PyTorch extension for handling deeply nested sequences of variable length
☆13Updated this week
Alternatives and similar repositories for foldedtensor
Users that are interested in foldedtensor are comparing it to the libraries listed below
Sorting:
- A collection of ETLs from common data formats to Medical Event Data Standard☆37Updated 4 months ago
- A simple set of MEDS polars-based ETL and transformation functions☆39Updated 3 weeks ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆92Updated last month
- General Healthcare Predictive Framework☆22Updated last week
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆160Updated last week
- Modular Python framework for building customizable annotation interfaces: text, images, and spreadsheet-style data.☆25Updated last week
- ☆27Updated 6 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆87Updated last month
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆97Updated 5 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆44Updated last week
- eds-scikit is a Python library providing tools to process and analyse OMOP data☆43Updated 11 months ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆35Updated 3 weeks ago
- A version of MIMIC-IV in FHIR☆48Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆202Updated 6 months ago
- A high-performance database and Python reader interface for MEDS datasets☆19Updated 2 months ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆116Updated 5 months ago
- ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization☆29Updated 11 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆118Updated 2 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆192Updated last month
- This repository is now archived. Further development has been moved to https://github.com/medkit-lib/medkit.☆24Updated 2 years ago
- ☆35Updated 2 months ago
- Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.☆149Updated last week
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆18Updated 4 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆38Updated 2 months ago
- ☂️ Auto-Scikit-Longitudinal (Auto-Sklong) is an automated machine learning (AutoML) library designed to analyse longitudinal data (Classi…☆44Updated 4 months ago
- Clairvoyance: a Unified, End-to-End AutoML Pipeline for Medical Time Series☆132Updated 3 years ago
- Corresponding code for experiments described in "Predicting Clinical Outcomes Across Changing Electronic Health Records." Presented at KD…☆11Updated 8 years ago
- Code for doing machine learning with various EHRs☆22Updated 2 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago