mmcdermott / MIMICIV_FMs_publicLinks
Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.
☆16Updated last year
Alternatives and similar repositories for MIMICIV_FMs_public
Users that are interested in MIMICIV_FMs_public are comparing it to the libraries listed below
Sorting:
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆35Updated last month
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆18Updated 4 months ago
- A simple set of MEDS polars-based ETL and transformation functions☆39Updated last month
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 3 years ago
- TemporAI: ML-centric Toolkit for Medical Time Series☆126Updated 2 years ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆19Updated 2 years ago
- Training HuggingFace models on EHR data☆37Updated last month
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆38Updated 2 months ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆88Updated 3 weeks ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆116Updated 5 months ago
- Code repository for the paper : Causal thinking for decision making on Electronic Health Records: why and how☆21Updated 2 years ago
- Repository for the paper 'MDS-ED: Multimodal Decision Support in the Emergency Department – a benchmark dataset based on MIMIC-IV'.☆20Updated 8 months ago
- ☆46Updated 2 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆44Updated 3 weeks ago
- circEWS public code☆74Updated last year
- Repository for the HiRID ICU Benchmark (HiB) project☆58Updated 2 years ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆87Updated 3 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆139Updated 4 months ago
- 🏥 ICU data with R 🏥☆53Updated 3 months ago
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆60Updated 2 years ago
- ☆82Updated 9 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆119Updated 2 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆68Updated 6 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆93Updated last month
- Resources for Machine Learning Explainability☆86Updated last year
- ☆37Updated 2 years ago
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆36Updated 3 years ago
- ☆27Updated 6 months ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Updated 2 years ago
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆168Updated 9 months ago