mmcdermott / MIMICIV_FMs_publicLinks
Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.
☆16Updated last year
Alternatives and similar repositories for MIMICIV_FMs_public
Users that are interested in MIMICIV_FMs_public are comparing it to the libraries listed below
Sorting:
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆33Updated 2 weeks ago
- A simple set of MEDS polars-based ETL and transformation functions☆38Updated 2 weeks ago
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆18Updated 4 months ago
- Training HuggingFace models on EHR data☆35Updated last month
- TemporAI: ML-centric Toolkit for Medical Time Series☆126Updated last year
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆86Updated this week
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆25Updated 3 years ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆38Updated 2 months ago
- circEWS public code☆74Updated last year
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆42Updated 2 months ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆116Updated 5 months ago
- Code repository for the paper : Causal thinking for decision making on Electronic Health Records: why and how☆20Updated 2 years ago
- ☆45Updated 2 years ago
- Repository for the paper 'MDS-ED: Multimodal Decision Support in the Emergency Department – a benchmark dataset based on MIMIC-IV'.☆20Updated 7 months ago
- Resources for Machine Learning Explainability☆86Updated last year
- 🏥 ICU data with R 🏥☆51Updated 3 months ago
- Repository for the HiRID ICU Benchmark (HiB) project☆58Updated 2 years ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆87Updated 3 years ago
- ☆27Updated 6 months ago
- source codes based on PyTorch to analyze EHR☆147Updated last year
- A high-performance database and Python reader interface for MEDS datasets☆19Updated last month
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆90Updated last month
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Updated 2 years ago
- Code for the paper "Deep Cox Mixtures for Survival Regression", Machine Learning for Healthcare Conference 2021☆29Updated 3 years ago
- ☆80Updated 9 months ago
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆36Updated 3 years ago
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆60Updated 2 years ago
- Replication of the arterial line study in MIMIC-IV☆75Updated 4 years ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆37Updated 4 months ago
- ☆30Updated 10 months ago