AnacletoLAB / ensmallen
π Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.
β38Updated 3 months ago
Related projects β
Alternatives and complementary repositories for ensmallen
- π Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.β41Updated 11 months ago
- π A Python package for using ontologies, terminologies, and biomedical nomenclaturesβ61Updated this week
- KGX is a Python library for exchanging Knowledge Graphsβ116Updated 3 months ago
- πΊοΈ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaβ¦β50Updated 2 weeks ago
- OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.β92Updated 10 months ago
- π Easily pick a place to store data for your Python code.β36Updated this week
- β12Updated 3 months ago
- NetworkX-based Python library for representing ontologiesβ82Updated last year
- Build PharMeBINet from different sources.β12Updated this week
- Given an input graph (ArangoDB or PyG) it generates graph embeddings using Low-Code framework built on top of PyG.β68Updated 5 months ago
- Grounding of biomedical named entities with contextual disambiguationβ39Updated 3 weeks ago
- PyBioPAX: A python implementation of the BioPAX object modelβ24Updated 6 months ago
- πͺ What's the latest version for each database?β26Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubβ32Updated 8 months ago
- π Results for the Ranking Metrics submission @ GLB 2022β11Updated 2 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)β21Updated 3 years ago
- LLM-based gene function enrichment toolβ10Updated 5 months ago
- First pass at a thin wrapper around the Monarch API and ChatGPT pluginβ13Updated last week
- A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vecβ156Updated 3 weeks ago
- Faultless AST for Open Biomedical Ontologies in Python.β25Updated 8 months ago
- code for Gogleva et al manuscriptβ45Updated last year
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their ownβ¦β16Updated last month
- Draft cell type definitions from data - candidates for inclusion in CLβ12Updated 4 months ago
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)β38Updated this week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)β33Updated this week
- Ontology cross-reference and mapping serviceβ17Updated 4 months ago
- mOWL: Machine Learning library with Ontologiesβ59Updated this week
- LLM-driven curation assist toolβ70Updated this week
- TypeDB Bio: Biomedical Knowledge Graphβ78Updated 5 months ago
- A performant, powerful query framework to search for network motifsβ81Updated 3 months ago