cooperative-computing-lab / makeflow-examples
Example workflows for the Makeflow workflow system.
☆33Updated last year
Related projects ⓘ
Alternatives and complementary repositories for makeflow-examples
- example singularity definition files and demos☆27Updated 6 years ago
- HPC Python lesson materials☆58Updated last year
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Updated 8 years ago
- Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn☆12Updated 8 months ago
- ☆16Updated last year
- dead Simple Queue - Slurm arrays for files with jobs in them.☆23Updated 2 years ago
- Ansible Playbook for usegalaxy.org☆30Updated this week
- scientific filesystem: a filesystem organization for scientific software and metadata☆30Updated 9 months ago
- Documentation and wiki for the PhenoMeNal H2020 E-Infrastructure Project☆21Updated 8 years ago
- Computational Biology & Bioinformatics Resources☆12Updated last year
- Render HTML reports from parametrized jupyter notebooks or Rmarkdown documents.☆10Updated last week
- The command-line interface to GGD☆42Updated 2 years ago
- Pretty GridEngine, Torque and Platform LSF status tables☆31Updated 8 years ago
- ☆14Updated 5 years ago
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Updated 4 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated last year
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆16Updated last year
- Interactive visulizations for track-based genomic data in R☆14Updated 2 months ago
- IPython notebooks to teach Genomics and Population Genetics☆21Updated 7 years ago
- X things you should take into consideration if you code for big data analysis☆24Updated 6 years ago
- Tools for Working with Taxonomic SQL Databases☆30Updated 5 months ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- deploy a snakemake pipeline directly from version control (under development)☆21Updated this week
- Misc. utilities☆11Updated 5 years ago
- Onboarding materials for the Greene Lab☆31Updated last month
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 6 years ago
- Proof of concept to use ansible + Lmod to deploy a bioinformatics server☆23Updated 6 months ago
- How to use Singularity!☆16Updated 4 years ago
- Documentation of the Snakemake-Profiles project.☆53Updated 2 years ago
- Integrates any BAM/BED file into the ChromNet group graphical model.☆8Updated 5 years ago