cooperative-computing-lab / makeflow-examplesLinks
Example workflows for the Makeflow workflow system.
☆34Updated 6 months ago
Alternatives and similar repositories for makeflow-examples
Users that are interested in makeflow-examples are comparing it to the libraries listed below
Sorting:
- example singularity definition files and demos☆27Updated 7 years ago
- Proof of concept to use ansible + Lmod to deploy a bioinformatics server☆24Updated 2 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- ☆28Updated 6 years ago
- Shape analysis of high-throughput data☆19Updated 9 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated 5 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Updated 3 years ago
- ☆17Updated last year
- ☆21Updated 9 years ago
- Misc. utilities☆11Updated 6 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10Updated 8 years ago
- Super high performance interactive heatmap software☆31Updated 6 years ago
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 8 years ago
- Introduction to Snakemake for Bioinformatics☆20Updated last week
- Stupid Simple Elastic Compute Cloud☆16Updated last year
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆82Updated 4 years ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- Reproducible GSEA Benchmarking☆13Updated 3 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆39Updated last year
- Onboarding materials for the Greene Lab☆31Updated 2 weeks ago
- Best practices for readable, sharable, and verifiable R code☆18Updated 6 years ago
- Terraform template to create AWS resources to execute jobs using nextflow☆22Updated 2 years ago
- Training material for intermediate R / Bioconductor courses☆17Updated 2 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated 2 years ago
- My latex resume using the moderncv template☆22Updated 2 months ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- does the magical pdf-to-pdf conversion popular in academic journal submission sites and does it faster than they do☆30Updated 6 years ago
- Materials for GCB535 at Penn.☆20Updated 6 years ago