cooperative-computing-lab / makeflow-examplesLinks
Example workflows for the Makeflow workflow system.
☆34Updated 6 months ago
Alternatives and similar repositories for makeflow-examples
Users that are interested in makeflow-examples are comparing it to the libraries listed below
Sorting:
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- example singularity definition files and demos☆27Updated 7 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated 5 years ago
- Proof of concept to use ansible + Lmod to deploy a bioinformatics server☆24Updated 3 months ago
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Updated last year
- ☆21Updated 9 years ago
- ☆28Updated 6 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- ☆10Updated last year
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 8 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Updated 3 years ago
- IPython notebooks to teach Genomics and Population Genetics☆21Updated 8 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆83Updated 4 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- Documentation and wiki for the PhenoMeNal H2020 E-Infrastructure Project☆22Updated 5 months ago
- My blog.☆16Updated last month
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆12Updated last year
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10Updated last year
- ☆16Updated 8 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- Reproducible GSEA Benchmarking☆13Updated 4 months ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- Documentation for NCBI BLAST AMI☆12Updated 3 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated last month
- Training material for intermediate R / Bioconductor courses☆17Updated 2 years ago
- Template for building a bioconductor workshop package using github actions☆21Updated 2 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Updated 3 months ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Updated 10 years ago
- My computational biology course as it evolves in real time☆14Updated 4 years ago