Framework for testing CWL tools and workflows
☆20Jun 25, 2026Updated last week
Alternatives and similar repositories for cwltest
Users that are interested in cwltest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.☆14Mar 20, 2024Updated 2 years ago
- Python utilities for CWL☆43Jun 26, 2026Updated last week
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- The CWL v1.0 - v1.2 user guide☆43Jun 18, 2026Updated 2 weeks ago
- An Ansible role for automated installation of tools from a Tool Shed into Galaxy.☆14Jun 17, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Released CWL v1.2.1 specification☆45Mar 21, 2026Updated 3 months ago
- Common Workflow Language reference implementation☆371Updated this week
- A web application to view and share Common Workflow Language workflows☆50Jun 24, 2026Updated last week
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 9 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆12Sep 9, 2025Updated 9 months ago
- Typescript data model for Common Workflow Language☆52Mar 3, 2023Updated 3 years ago
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Nov 9, 2024Updated last year
- APIs for discovering genomics tools, their metadata and their containers☆35Mar 28, 2026Updated 3 months ago
- Source code for the https://workflows.community website☆17Jun 27, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Jul 15, 2020Updated 5 years ago
- Defunct. Use https://github.com/Linuxbrew/docker☆14Jun 24, 2016Updated 10 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- A library for generating an interactive SVG visualization of CWL workflows☆78Aug 15, 2024Updated last year
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- A project to launch the galaxy docker image easily using ansible☆11Jan 22, 2020Updated 6 years ago
- Registration of Galaxy Tools in Elixir☆12Jan 7, 2019Updated 7 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Nov 5, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 9 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆13Jan 21, 2021Updated 5 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 8 years ago
- Cross Application Programmable IO☆16Jun 22, 2026Updated last week
- Testing module for Galaxy workflows☆10Jul 31, 2018Updated 7 years ago
- An external library for delivering Slurm Elastic Computing.☆12Mar 31, 2017Updated 9 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Aug 9, 2016Updated 9 years ago
- Java SDK for the Common Workflow Language standards☆15Jun 19, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12Jun 18, 2022Updated 4 years ago
- Accumulating container resource usage with workflow metadata☆19Mar 17, 2021Updated 5 years ago
- Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML☆16Jun 12, 2026Updated 3 weeks ago
- Python package to extend Airflow functionality with CWL1.1 support☆194Oct 25, 2023Updated 2 years ago
- CWL for GDC DNASeq workflows☆24Mar 30, 2026Updated 3 months ago
- cache packages permanently☆16Oct 9, 2025Updated 8 months ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Feb 20, 2015Updated 11 years ago