common-workflow-language / cwltest
Framework for testing CWL tools and workflows
☆17Updated last month
Alternatives and similar repositories for cwltest:
Users that are interested in cwltest are comparing it to the libraries listed below
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated 3 weeks ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 3 months ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 5 months ago
- Python utilities for CWL☆39Updated last month
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Updated 4 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆40Updated this week
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆78Updated 3 weeks ago
- Java SDK for the Common Workflow Language standards☆13Updated last week
- Generating tool descriptors from bio.tools☆9Updated 6 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- APIs for discovering genomics tools, their metadata and their containers☆31Updated 5 months ago
- The WES API is a standard way to run and manage portable workflows.☆83Updated 6 months ago
- WDL plugin for pytest☆48Updated last year
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆19Updated 2 years ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Updated this week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- ☆12Updated 2 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- A web application to view and share Common Workflow Language workflows☆46Updated this week
- FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.☆14Updated last year
- CWL for GDC DNASeq workflows☆22Updated last week
- ☆27Updated last year
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆9Updated this week
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆41Updated 3 months ago
- Contains a set of Galaxy Tools mostly written by the Galaxy Team.☆36Updated 2 months ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago