common-workflow-language / cwltest
Framework for testing CWL tools and workflows
☆17Updated this week
Related projects ⓘ
Alternatives and complementary repositories for cwltest
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 2 weeks ago
- Python utilities for CWL☆36Updated this week
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆21Updated last month
- Accumulating container resource usage with workflow metadata☆19Updated 3 years ago
- A new open source tool to run CWL workflows on LSF☆36Updated last year
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated 4 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- a place for GA4GH-related wiki pages☆15Updated 7 years ago
- Trigger CWL workflows via GA4GH WES and TES☆16Updated 3 months ago
- WDL plugin for pytest☆48Updated last year
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 4 months ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆39Updated 2 months ago
- Generating tool descriptors from bio.tools☆9Updated 6 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 3 years ago
- APIs for discovering genomics tools, their metadata and their containers☆30Updated 3 weeks ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆18Updated last year
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆76Updated 4 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆19Updated 2 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆70Updated 3 months ago
- Convert CWL to WDL☆17Updated 8 years ago
- The WES API is a standard way to run and manage portable workflows.☆82Updated last month
- A translator from WDL to CWL v1.2☆26Updated this week
- Testing building mulled containers for multi-requirement tools.☆69Updated this week
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆40Updated last month
- Workflow Execution Service Backend☆17Updated 3 weeks ago
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆30Updated this week
- FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.☆14Updated 8 months ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆90Updated 3 weeks ago
- ☆82Updated last week