This repository contains the CWL description of the EBI Metagenomics pipeline
☆21Apr 7, 2021Updated 5 years ago
Alternatives and similar repositories for ebi-metagenomics-cwl
Users that are interested in ebi-metagenomics-cwl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Feb 11, 2022Updated 4 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17May 5, 2026Updated 5 months ago
- Tools and utilities for running Dockerized metagenomics tools in the Cloud☆21Apr 8, 2019Updated 7 years ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆34Jun 18, 2023Updated 3 years ago
- This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Wor…☆18Jul 8, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Released CWL v1.2.1 specification☆45Sep 20, 2026Updated 2 weeks ago
- Python utilities for CWL☆43Sep 29, 2026Updated last week
- High-reproducibility CWL runner powered by Guix☆26Sep 4, 2026Updated last month
- Mostly useful scripts and files for processing MiSeq amplicon data☆19Jul 1, 2016Updated 10 years ago
- Convert PDB residues to their Uniprot equivalents☆17Mar 31, 2020Updated 6 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- This repo hosts the API metadata for the Translator project☆15Sep 2, 2026Updated last month
- FDA High-performance Integrated Virtual Environment (HIVE)☆41Sep 11, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tutorial with snakemake and Scientific Filesystem☆16Nov 11, 2020Updated 5 years ago
- Contact Prediction ToolKit☆22Jul 23, 2026Updated 2 months ago
- Accumulating container resource usage with workflow metadata☆19Mar 17, 2021Updated 5 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 7 years ago
- Create cwl workflows by writing a simple Python script☆39Apr 29, 2020Updated 6 years ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 6 years ago
- A new open source tool to run CWL workflows on LSF☆37Nov 24, 2022Updated 3 years ago
- ☆11Aug 6, 2019Updated 7 years ago
- Web content for Meren Lab☆12Oct 2, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Groho (গ্রহ) is a simulator for inter-planetary travel☆12Jul 15, 2020Updated 6 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- A retro edutainment game of genome medicine for the Atari 2600☆12Jan 1, 2018Updated 8 years ago
- Portable MurmurHash Implementation☆12Feb 19, 2024Updated 2 years ago
- ☆15Jun 22, 2020Updated 6 years ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 4 years ago
- FiveThirtyEight 2020 Forecast Approximation☆11Nov 16, 2020Updated 5 years ago
- Infrastructure setup.☆10Jul 27, 2019Updated 7 years ago
- generate add to google calendar link☆16Oct 14, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Oct 7, 2017Updated 9 years ago
- N-dimensional arrays, with Zarr and HDF5 integrations☆19Feb 26, 2019Updated 7 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 5 years ago
- A template README file for including with CircuitPython badges.☆10Feb 2, 2021Updated 5 years ago
- Yet Another CWL Engine by Golang☆18Mar 19, 2019Updated 7 years ago
- Object-oriented design pattern examples in Julia.☆14Feb 8, 2020Updated 6 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago