EBI-Metagenomics / ebi-metagenomics-cwlLinks
This repository contains the CWL description of the EBI Metagenomics pipeline
☆21Updated 4 years ago
Alternatives and similar repositories for ebi-metagenomics-cwl
Users that are interested in ebi-metagenomics-cwl are comparing it to the libraries listed below
Sorting:
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- reference free variant assembly☆33Updated last year
- http://www.combio.pl/alfree☆23Updated 2 years ago
- The Ensembl Variation Perl API and SQL schema☆28Updated last week
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Updated 2 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Updated 9 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Awesome resources related to Galaxy project☆12Updated 6 months ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- ☆21Updated 6 years ago
- ☆14Updated 6 years ago
- A collection of bioinformatics file format specimens to test against☆47Updated 5 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆25Updated 7 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 6 years ago
- Testing building mulled containers for multi-requirement tools.☆73Updated this week
- Tools for querying and analysis of genomic data☆27Updated 6 months ago
- The MG-RAST pipeline☆23Updated 2 years ago
- ☆36Updated last month
- A Teaching Engine for Genomics☆12Updated 4 years ago
- Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow☆12Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated last year