clindet / bget
Portable command-line tool to query bioinformatics APIs, data, databases and files.
☆89Updated 2 years ago
Alternatives and similar repositories for bget
Users that are interested in bget are comparing it to the libraries listed below
Sorting:
- Multiscale embedded gene co-expression network analysis☆51Updated last year
- A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform☆56Updated 2 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆43Updated last year
- 基于rstudio、code-server、jupyter-lab的dockerfile,用于快速搭建数据分析环境。☆57Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆83Updated 10 months ago
- Simplify functional enrichment results☆115Updated 8 months ago
- Create KEGG.db Package☆60Updated 2 years ago
- my first R package just for testing☆42Updated 5 years ago
- DEG analysis and KEGG/GO enrichment analysis☆68Updated 7 years ago
- Fuji plot—a circos representation of multiple GWAS results—☆84Updated last year
- Guide for the Differential Expression Analysis of RNAseq data using DESeq2☆22Updated 6 years ago
- Bayesian network plot for the enrichment analysis results☆64Updated 7 months ago
- My own tools code for NGS data analysis (Next Generation Sequencing)☆30Updated 5 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆164Updated 5 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated 9 months ago
- Biomedical knowledge mining using GOSemSim and clusterProfiler☆77Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- R package for genomic feature analysis and visualization☆77Updated 3 weeks ago
- Transcript quantification import for modular pipelines☆138Updated last year
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆44Updated last year
- Transcriptomics Visualization R package.☆71Updated 3 weeks ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆130Updated 10 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆64Updated 6 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 5 months ago
- GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC☆66Updated last year
- An R interface to the MEME Suite☆50Updated 7 months ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- Statistical Analysis of RNA-Seq Tools☆107Updated last month
- parallel-fastq-dump implementation in bash script☆41Updated 5 years ago
- RNA-seq data analysis practical☆61Updated 10 years ago