Portable command-line tool to query bioinformatics APIs, data, databases and files.
☆90Feb 23, 2023Updated 3 years ago
Alternatives and similar repositories for bget
Users that are interested in bget are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Let's get started!☆15Oct 21, 2019Updated 6 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆15Jul 25, 2025Updated 8 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 4 years ago
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 7 years ago
- Source code of openbiox homepage (under development status).☆14May 9, 2023Updated 2 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 8 months ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆10Jan 21, 2023Updated 3 years ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated 10 months ago
- ☆21Sep 22, 2022Updated 3 years ago
- Documentation of Hiplot (ORG) visualization platform.☆28Mar 2, 2023Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 7 months ago
- Script for downloading GitHub.☆13Sep 24, 2020Updated 5 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 7 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆24Aug 7, 2023Updated 2 years ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- Dichotomous of innate immune landscape☆17Aug 31, 2019Updated 6 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆46Nov 5, 2019Updated 6 years ago
- anor: an annotation and visualization system based on R and Shiny framework☆33Apr 20, 2020Updated 5 years ago
- Git使用手册☆17Mar 10, 2019Updated 7 years ago
- Guangchuang Yu's CV☆43Feb 2, 2026Updated last month
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Mar 7, 2020Updated 6 years ago
- a guideRNA database generation tool☆18Mar 3, 2025Updated last year
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 3 months ago
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Robust Open Reading Frame prediction (ANGLE re-implementation)☆16Aug 2, 2021Updated 4 years ago