Alternatives and similar repositories for singularity-in-jupyter-notebook

Users that are interested in singularity-in-jupyter-notebook are comparing it to the libraries listed below

• cjprybol / reproducibility-via-singularity
  A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
  ☆26Updated 8 years ago
• afgane / slurmscale
  An external library for delivering Slurm Elastic Computing.
  ☆11Updated 8 years ago
• singularityhub / singularity-deploy
  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
  ☆17Updated last year
• NERSC / slurm-magic
  IPython magic for SLURM.
  ☆69Updated 5 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• mzwiessele / topslam
  manifold metric and correction techniques for (Bayesian) GPLVM from GPy
  ☆12Updated 5 years ago
• singularityhub / singularityhub.github.io
  Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs
  ☆69Updated 2 years ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• jupyterhub / jupyterhub-deploy-hpc
  Documented examples of Jupyterhub deployment in HPC settings
  ☆36Updated last year
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆36Updated this week
• adrianveres / polo
  Python Optimal Leaf Ordering for Hierarchical Clustering
  ☆21Updated 8 years ago
• mcapuccini / spark-on-slurm
  ☆12Updated 9 years ago
• psteinb / hpc-in-a-day
  a full day lesson material to teach the basics of using a HPC cluster to novices
  ☆34Updated 6 years ago
• Snakemake-Profiles / pbs-torque
  ☆16Updated last year
• dask / dask-drmaa
  Deploy Dask on DRMAA clusters
  ☆40Updated 4 years ago
• dbcls / AOE
  AOE (All Of gene Expression): Index and meta-analysis of gene expression data that works
  ☆11Updated 3 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• FredHutch / easybuild-life-sciences
  Howto and implementation documentation
  ☆22Updated last week
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆54Updated 3 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• lucapinello / bsub_jupyter
  Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…
  ☆20Updated 3 years ago
• broadinstitute / wdl
  Workflow Description Language - Specification and Implementations
  ☆26Updated 6 years ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 5 years ago
• higlass / scipy19
  Slides and demos from our SciPyConf 2019 talk
  ☆13Updated 3 years ago
• omerwe / LEAP
  Liability Estimation for Case-Control Studies
  ☆10Updated 4 years ago
• fasrc / best_slurm_partition
  Find Best SLURM Partition to Run a Job
  ☆14Updated last year
• leipzig / SandwichesWithSnakemake
  This is a beginner's tutorial to Snakemake
  ☆70Updated 9 years ago
• ycrc / dSQ
  dead Simple Queue - Slurm arrays for files with jobs in them.
  ☆24Updated 3 years ago