clemsonciti / singularity-in-jupyter-notebookLinks
Using singularity containers from Jupyter Notebook
☆9Updated 8 years ago
Alternatives and similar repositories for singularity-in-jupyter-notebook
Users that are interested in singularity-in-jupyter-notebook are comparing it to the libraries listed below
Sorting:
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 8 years ago
- Howto and implementation documentation☆22Updated last week
- Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs☆69Updated 3 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Updated 3 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 8 years ago
- Port Forwarding Utility☆52Updated last year
- example singularity definition files and demos☆27Updated 7 years ago
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- ☆12Updated 6 years ago
- submit jobs to slurm with quick-and-dirty python☆94Updated 2 years ago
- official build specifications for jupyter☆13Updated 4 years ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Updated 5 years ago
- HPC Python lesson materials☆61Updated 2 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 5 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Updated 5 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10Updated 8 years ago
- Materials for GCB535 at Penn.☆20Updated 6 years ago
- Example workflows for the Makeflow workflow system.☆34Updated 5 months ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 9 months ago
- ☆11Updated 8 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated last week
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- streamlined singularity python client (spython) for singularity☆59Updated last month
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆21Updated 9 years ago