ckoenigs / PharMeBINetLinks
Build PharMeBINet from different sources.
☆19Updated this week
Alternatives and similar repositories for PharMeBINet
Users that are interested in PharMeBINet are comparing it to the libraries listed below
Sorting:
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆25Updated 3 weeks ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 4 months ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Updated last year
- ☆57Updated 4 years ago
- ☆30Updated last year
- The Clinical Trials Knowledge Graph☆61Updated 2 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated 2 weeks ago
- ☆46Updated 5 months ago
- ☆68Updated 2 years ago
- A resource of adverse drug effects extracted from FDA structured product labels☆83Updated 3 months ago
- code for Gogleva et al manuscript☆46Updated 2 years ago
- 🪝 What's the latest version for each database?☆27Updated last week
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆236Updated 4 months ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆194Updated last year
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆48Updated 3 weeks ago
- Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.☆19Updated 2 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 11 months ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆51Updated 2 months ago
- A stitching platform for InXight☆15Updated 6 months ago
- A Standard Database for Drug Repositioning☆19Updated 8 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆74Updated last week
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆40Updated last week
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆31Updated 6 months ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆112Updated 3 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆105Updated last year
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆18Updated 2 months ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆74Updated 6 months ago
- ☆18Updated last year