ckoenigs / PharMeBINetLinks
Build PharMeBINet from different sources.
β17Updated 2 months ago
Alternatives and similar repositories for PharMeBINet
Users that are interested in PharMeBINet are comparing it to the libraries listed below
Sorting:
- β23Updated 7 months ago
- πΊοΈ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaβ¦β55Updated this week
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usiβ¦β11Updated last year
- A Standard Database for Drug Repositioningβ19Updated 7 years ago
- The Clinical Trials Knowledge Graphβ57Updated 2 years ago
- πͺ What's the latest version for each database?β27Updated this week
- β55Updated 4 years ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubβ32Updated last year
- π A Python package for using ontologies, terminologies, and biomedical nomenclaturesβ69Updated last week
- Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-referencβ¦β21Updated 4 years ago
- β18Updated last year
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.β64Updated last month
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)β42Updated this week
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligenceβ¦β33Updated this week
- β22Updated 2 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingβ32Updated 7 years ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"β20Updated last year
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bβ¦β17Updated this week
- β15Updated last month
- β24Updated 4 years ago
- A stitching platform for InXightβ15Updated 2 months ago
- Template for creating a BioCypher-driven knowledge graphβ12Updated 3 weeks ago
- Network-based project to explore gene connectivity through biological scalesβ23Updated 8 months ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 2 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)β21Updated 3 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)β35Updated this week
- Github repo for the Experimental Factor Ontology (EFO)β58Updated last week
- The light frontend for BioChatter, in pure Pythonβ54Updated 2 weeks ago
- β19Updated 5 years ago
- Biomedical Relation Extraction with Knowledge Graph-based Recommendationsβ8Updated last year