ninglab / CTKGLinks
The Clinical Trials Knowledge Graph
☆64Updated 2 years ago
Alternatives and similar repositories for CTKG
Users that are interested in CTKG are comparing it to the libraries listed below
Sorting:
- ☆58Updated 4 years ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆48Updated 2 weeks ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Updated last year
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Updated 3 months ago
- A Knowledge Graph for Relational Learning On Biological Data☆106Updated last year
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆238Updated 5 months ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- Knowledge-enhanced learned representation enriches protein sequence and SMILES drug databases with a large Knowledge Graph fused from dif…☆61Updated last month
- ☆47Updated 6 months ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 5 months ago
- code for Gogleva et al manuscript☆46Updated 2 years ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆18Updated 3 months ago
- Build PharMeBINet from different sources.☆20Updated last week
- PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development☆115Updated last year
- benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, p…☆134Updated 4 months ago
- [Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summa…☆87Updated last year
- Analysis notebooks and database interaction scripts for the nsides project☆19Updated last year
- Python script for processing DrugBank XML to MySQL-ready CSV files☆19Updated 8 years ago
- ☆68Updated 2 years ago
- ☆11Updated 5 years ago
- The official code implementation for DREAMwalk in Python.☆29Updated 2 years ago
- Findings of EMNLP'22 | Trial2Vec: Zero-Shot Clinical Trial Document Similarity Search using Self-Supervision☆25Updated last year
- ☆17Updated 4 years ago
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆154Updated last year
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆34Updated 2 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆44Updated 4 years ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆31Updated 7 months ago
- Implementation of Using Drug Descriptions and Molecular Structures for Drug-Drug Interaction Extraction from Literature☆40Updated 4 years ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆98Updated 3 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆25Updated last month