Peter554 / StainToolsLinks
Tools for tissue image stain normalisation and augmentation in Python 3
☆348Updated 4 years ago
Alternatives and similar repositories for StainTools
Users that are interested in StainTools are comparing it to the libraries listed below
Sorting:
- Python Whole Slide Image Preprocessing☆299Updated 3 years ago
- Some stain normalization code☆94Updated 3 years ago
- ☆69Updated 5 years ago
- ☆346Updated 4 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆318Updated last month
- DeepLearning - Camelyon16 dataset☆129Updated 7 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Updated last year
- cGAN-based Multi Organ Nuclei Segmentation☆195Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆174Updated 2 months ago
- Interactive Segmentation of Nucleus☆67Updated 3 years ago
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆131Updated 6 years ago
- H&E histopathological staining normalization☆110Updated 6 years ago
- A Python toolkit for pathology image analysis algorithms.☆463Updated 3 weeks ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆209Updated 6 years ago
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆511Updated last year
- This is the MATLAB code for stain separation and color normalization in computational pathology (histopathological images)☆70Updated 9 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 5 years ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆175Updated 3 years ago
- Deep Convolutional Gaussian Mixture Model for Stain-Color Normalization in Histopathological H&E Images☆82Updated 4 years ago
- Pretrained model for self supervised histopathology☆122Updated 3 years ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆682Updated 2 years ago
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆95Updated 6 years ago
- adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"☆33Updated 5 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆143Updated 4 years ago
- StainNet: a fast and robust stain normalization network☆53Updated 4 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Updated 3 years ago
- ☆30Updated 6 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆72Updated 3 years ago
- Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings o…☆98Updated 4 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆102Updated 6 years ago