Tools for tissue image stain normalisation and augmentation in Python 3
☆348May 8, 2021Updated 4 years ago
Alternatives and similar repositories for StainTools
Users that are interested in StainTools are comparing it to the libraries listed below
Sorting:
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆177Nov 13, 2025Updated 3 months ago
- H&E histopathological staining normalization☆111Jan 24, 2020Updated 6 years ago
- Staining unmixing and normalization for histopathology images.☆47Feb 8, 2019Updated 7 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆318Dec 10, 2025Updated 2 months ago
- Python 3 library for the augmentation & normalization of H&E images☆64Sep 12, 2022Updated 3 years ago
- Some stain normalization code☆94Oct 9, 2022Updated 3 years ago
- Image-to-Image Translation in PyTorch☆24Sep 21, 2023Updated 2 years ago
- Stain normalization parameters used in the paper "F. Ciompi et al., The importance of stain normalization in colorectal tissue classifica…☆28May 15, 2019Updated 6 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Mar 19, 2020Updated 5 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆509Updated this week
- A Python toolkit for pathology image analysis algorithms.☆465Updated this week
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- Deep Convolutional Gaussian Mixture Model for Stain-Color Normalization in Histopathological H&E Images☆83Aug 26, 2021Updated 4 years ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆664Sep 12, 2023Updated 2 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆208Mar 7, 2019Updated 6 years ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆688Oct 27, 2023Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Jun 20, 2023Updated 2 years ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆27Feb 23, 2024Updated 2 years ago
- GPU-accelerated Stain Normalization and Augmentation in PyTorch☆40Feb 10, 2026Updated 2 weeks ago
- Open source tools for computational pathology - Nature BME☆1,611Apr 14, 2025Updated 10 months ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆614Mar 19, 2024Updated last year
- cGAN-based Multi Organ Nuclei Segmentation☆195Jun 10, 2022Updated 3 years ago
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆511Jun 7, 2024Updated last year
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆267Dec 23, 2023Updated 2 years ago
- WSICS☆30Apr 19, 2019Updated 6 years ago
- Python Whole Slide Image Preprocessing☆298Nov 15, 2022Updated 3 years ago
- The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.☆317Aug 1, 2025Updated 7 months ago
- This is the MATLAB code for stain separation and color normalization in computational pathology (histopathological images)☆70Mar 12, 2016Updated 9 years ago
- Library for Digital Pathology Image Processing☆442Updated this week
- ☆350Mar 29, 2025Updated 11 months ago
- ☆346Nov 21, 2021Updated 4 years ago
- Virtual Alignment of pathoLogy Image Series☆208Jun 25, 2025Updated 8 months ago
- ☆69Feb 4, 2021Updated 5 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Jul 25, 2024Updated last year
- Convert jiangfeng special format kfb to common format svs☆19Jul 17, 2019Updated 6 years ago
- Re-stained whole slide image alignment☆36Oct 16, 2023Updated 2 years ago
- StainNet: a fast and robust stain normalization network☆53Nov 23, 2021Updated 4 years ago
- Interactive Segmentation of Nucleus☆67Nov 22, 2022Updated 3 years ago