Peter554 / StainTools
Tools for tissue image stain normalisation and augmentation in Python 3
☆325Updated 3 years ago
Alternatives and similar repositories for StainTools:
Users that are interested in StainTools are comparing it to the libraries listed below
- Some stain normalization code☆85Updated 2 years ago
- Python Whole Slide Image Preprocessing☆275Updated 2 years ago
- Stain normalization tools for histological analysis and computational pathology☆125Updated this week
- ☆342Updated 3 years ago
- DeepLearning - Camelyon16 dataset☆119Updated 6 years ago
- Deep Convolutional Gaussian Mixture Model for Stain-Color Normalization in Histopathological H&E Images☆79Updated 3 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆274Updated last month
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆129Updated 5 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆206Updated 5 years ago
- ☆65Updated 3 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 4 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆54Updated 2 years ago
- Implementation of Camelyon'16 grand challenge☆183Updated 5 years ago
- Pretrained model for self supervised histopathology☆110Updated 2 years ago
- Attention-based Deep MIL implementation and application☆160Updated 3 years ago
- This is the MATLAB code for stain separation and color normalization in computational pathology (histopathological images)☆67Updated 8 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆160Updated 5 months ago
- adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"☆31Updated 4 years ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆548Updated last year
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆129Updated 3 years ago
- H&E histopathological staining normalization☆106Updated 4 years ago
- A Python toolkit for pathology image analysis algorithms.☆404Updated last month
- An implementation of Unet for pytorch designed for digital pathology segmentation☆122Updated 2 years ago
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆500Updated 7 months ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆79Updated 2 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆75Updated 2 years ago
- Interactive Segmentation of Nucleus☆61Updated 2 years ago
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆87Updated 5 years ago
- DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image☆386Updated 8 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago