Alternatives and similar repositories for LDAK

Users that are interested in LDAK are comparing it to the libraries listed below

• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆62Updated last month
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆68Updated 8 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆71Updated last week
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆90Updated 3 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆50Updated 6 months ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆71Updated 2 years ago
• fhormoz / caviar
  ☆63Updated 3 years ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆93Updated last month
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆86Updated 3 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆84Updated last month
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆76Updated last week
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 5 months ago
• stormlovetao / eQTLQC
  ☆27Updated 5 years ago
• zhilizheng / SBayesRC
  ☆45Updated 5 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆53Updated 4 months ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated last week
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• Cloufield / CTGCatalog
  A collection of commonly used resources for complex trait genetics.
  ☆35Updated last month
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 6 months ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆56Updated 2 months ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆52Updated 9 months ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆48Updated 3 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆12Updated 8 months ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆25Updated 2 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆41Updated last year
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆127Updated last year
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆25Updated last month
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆72Updated 4 years ago